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5T64

X-ray structure of the C3-methyltransferase KijD1 from Actinomadura kijaniata in complex with TDP and SAH

Functional Information from GO Data
ChainGOidnamespacecontents
A0016740molecular_functiontransferase activity
A0046872molecular_functionmetal ion binding
B0016740molecular_functiontransferase activity
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 501
ChainResidue
ACYS13
ACYS16
ACYS54
ACYS57

site_idAC2
Number of Residues22
Detailsbinding site for residue SAH A 502
ChainResidue
AGLY113
AASN115
APHE133
AGLU134
APRO135
ASER136
APHE154
APHE155
AALA176
AASN177
ATHR178
AHIS181
AILE182
ATYR184
AHOH622
AHOH682
AHOH699
APHE72
ATYR76
ASER80
APHE90
AILE112

site_idAC3
Number of Residues6
Detailsbinding site for residue MG A 503
ChainResidue
AHOH644
AHOH772
AHOH952
AHOH983
BHOH647
BHOH777

site_idAC4
Number of Residues6
Detailsbinding site for residue MG A 504
ChainResidue
AHOH628
AHOH629
AHOH817
AHOH935
AHOH943
AHOH996

site_idAC5
Number of Residues4
Detailsbinding site for residue MG A 505
ChainResidue
AASP25
AHOH768
AHOH845
BHOH863

site_idAC6
Number of Residues15
Detailsbinding site for residue TMP A 506
ChainResidue
ATYR323
AGLY324
ATHR326
AALA327
AASP348
ATHR349
ATHR350
ALYS353
AILE390
ALYS393
AHOH716
AHOH794
AHOH800
AHOH853
AHOH872

site_idAC7
Number of Residues4
Detailsbinding site for residue ZN B 501
ChainResidue
BCYS13
BCYS16
BCYS54
BCYS57

site_idAC8
Number of Residues20
Detailsbinding site for residue SAH B 502
ChainResidue
BSER80
BPHE90
BILE112
BGLY113
BASN115
BPHE133
BGLU134
BPRO135
BSER136
BPHE154
BPHE155
BALA176
BASN177
BTHR178
BILE182
BTYR184
BHOH659
BHOH669
BHOH677
BHOH709

site_idAC9
Number of Residues6
Detailsbinding site for residue EDO B 503
ChainResidue
BVAL246
BARG268
BTHR269
BHOH649
BHOH672
BHOH770

site_idAD1
Number of Residues5
Detailsbinding site for residue EDO B 504
ChainResidue
BHIS89
BARG96
BGLU249
BLEU251
BARG259

site_idAD2
Number of Residues12
Detailsbinding site for residue TMP B 505
ChainResidue
BHOH603
BHOH645
BHOH763
BHOH769
BHOH788
BTHR326
BASP348
BTHR349
BTHR350
BLYS353
BILE390
BLYS393

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PDB entries from 2024-05-15

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