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5T14

DNA polymerase kappa extending beyond a bulky major benzo[a]pyrene adduct

Functional Information from GO Data
ChainGOidnamespacecontents
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006281biological_processDNA repair
B0003684molecular_functiondamaged DNA binding
B0003887molecular_functionDNA-directed DNA polymerase activity
B0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue MG A 601
ChainResidue
AASP107
AMET108
AASP198
ADZ4603

site_idAC2
Number of Residues5
Detailsbinding site for residue MG A 602
ChainResidue
AARG352
AVAL354
AILE357
AHOH721
CDA12

site_idAC3
Number of Residues16
Detailsbinding site for residue DZ4 A 603
ChainResidue
AASP107
AMET108
AASP109
AALA110
APHE111
ATYR112
ASER137
ATHR138
ATYR141
AARG144
AASP198
AGLU199
ALYS328
AMG601
CDC13
DDT5

site_idAC4
Number of Residues3
Detailsbinding site for residue PGE B 601
ChainResidue
BALA428
BTYR432
BLYS489

site_idAC5
Number of Residues5
Detailsbinding site for residue MG B 602
ChainResidue
BASP107
BMET108
BASP198
BLYS328
BDZ4604

site_idAC6
Number of Residues4
Detailsbinding site for residue MG B 603
ChainResidue
BARG352
BVAL354
BILE357
PDA12

site_idAC7
Number of Residues17
Detailsbinding site for residue DZ4 B 604
ChainResidue
BASP107
BMET108
BASP109
BALA110
BPHE111
BTYR112
BSER137
BTHR138
BTYR141
BARG144
BALA151
BASP198
BLYS328
BMG602
BHOH709
PDC13
TDT5

site_idAC8
Number of Residues18
Detailsbinding site for Di-nucleotide DT D 5 and VKJ D 6
ChainResidue
AMET135
AALA151
APHE171
AGLU419
ATHR421
AARG507
ALEU508
ADZ4603
AHOH702
AHOH733
CDC13
DDA4
DDT7
DHOH101
DHOH102
DHOH103
DHOH104
DHOH105

site_idAC9
Number of Residues16
Detailsbinding site for Di-nucleotide VKJ D 6 and DT D 7
ChainResidue
APHE171
ASER417
AVAL418
AGLU419
ATHR421
ALEU508
AHOH733
CDA12
CDC13
DDT5
DDC8
DHOH101
DHOH102
DHOH103
DHOH104
DHOH105

site_idAD1
Number of Residues15
Detailsbinding site for Di-nucleotide DT T 5 and VKJ T 6
ChainResidue
PDC13
TDA4
TDT7
THOH101
BMET135
BALA151
BPHE171
BGLU419
BARG420
BTHR421
BARG507
BLEU508
BDZ4604
BHOH702
PDA12

site_idAD2
Number of Residues10
Detailsbinding site for Di-nucleotide VKJ T 6 and DT T 7
ChainResidue
BPHE171
BVAL418
BGLU419
BARG420
BTHR421
BLEU508
PDA12
PDC13
TDT5
TDC8

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AASP107
AASP198
AGLU199
BASP107
BASP198
BGLU199

222036

PDB entries from 2024-07-03

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