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5SZT

Crystal structure of the large fragment of DNA Polymerase I from Thermus aquaticus in a closed ternary complex with 7-(N-(10-hydroxydecanoyl)-aminopentenyl)-7-deaza-2'-dATP

Functional Information from GO Data
ChainGOidnamespacecontents
A0001882molecular_functionnucleoside binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue MG A 901
ChainResidue
AASP610
ATYR611
AASP785
AMG902
A72J907

site_idAC2
Number of Residues7
Detailsbinding site for residue MG A 902
ChainResidue
AHOH1064
AHOH1084
BDOC112
AASP610
AASP785
AMG901
A72J907

site_idAC3
Number of Residues10
Detailsbinding site for residue GOL A 903
ChainResidue
ATHR544
ATYR545
APRO579
AASN580
AASN583
AHOH1010
AHOH1016
CDC209
CDC210
CHOH416

site_idAC4
Number of Residues3
Detailsbinding site for residue ACT A 904
ChainResidue
AARG313
ATRP318
ALEU552

site_idAC5
Number of Residues1
Detailsbinding site for residue ACT A 905
ChainResidue
APHE724

site_idAC6
Number of Residues2
Detailsbinding site for residue ACT A 906
ChainResidue
AASP371
AARG435

site_idAC7
Number of Residues24
Detailsbinding site for residue 72J A 907
ChainResidue
AARG573
AARG587
AASP610
ATYR611
ASER612
AGLN613
AILE614
AGLU615
AHIS639
AARG659
AARG660
ALYS663
ATHR664
APHE667
AASP785
AMG901
AMG902
AHOH1018
AHOH1080
AHOH1084
AHOH1145
BDOC112
CDT204
CDG205

site_idAC8
Number of Residues6
Detailsbinding site for residue MG B 201
ChainResidue
BHOH301
BHOH313
BHOH315
BHOH322
BHOH323
CHOH430

site_idAC9
Number of Residues3
Detailsbinding site for residue GOL C 301
ChainResidue
CDG205
CDG206
CHOH407

site_idAD1
Number of Residues2
Detailsbinding site for residue ACT C 302
ChainResidue
CDG206
CDC207

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL
ChainResidueDetails
AARG659-LEU678

223532

PDB entries from 2024-08-07

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