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5SXR

Crystal structure of B. pseudomallei KatG with NAD bound

Replaces:  3N3O
Functional Information from GO Data
ChainGOidnamespacecontents
A0004096molecular_functioncatalase activity
A0004601molecular_functionperoxidase activity
A0005829cellular_componentcytosol
A0006979biological_processresponse to oxidative stress
A0020037molecular_functionheme binding
A0042744biological_processhydrogen peroxide catabolic process
A0046872molecular_functionmetal ion binding
A0070301biological_processcellular response to hydrogen peroxide
A0098869biological_processcellular oxidant detoxification
B0004096molecular_functioncatalase activity
B0004601molecular_functionperoxidase activity
B0005829cellular_componentcytosol
B0006979biological_processresponse to oxidative stress
B0020037molecular_functionheme binding
B0042744biological_processhydrogen peroxide catabolic process
B0046872molecular_functionmetal ion binding
B0070301biological_processcellular response to hydrogen peroxide
B0098869biological_processcellular oxidant detoxification
Functional Information from PDB Data
site_idAC1
Number of Residues19
Detailsbinding site for residue HEM A 801
ChainResidue
AGLY104
ATHR284
AHIS285
ATHR323
ASER324
ATHR388
ATRP420
AOXY804
AHOH964
AHOH987
AHOH1053
ALEU105
ATOX111
AVAL239
ALEU274
AGLY278
AHIS279
AGLY282
ALYS283

site_idAC2
Number of Residues6
Detailsbinding site for residue NA A 802
ChainResidue
AGLY122
AARG123
AGLY124
ASER494
AHOH1097
AHOH1492

site_idAC3
Number of Residues6
Detailsbinding site for residue CL A 803
ChainResidue
AGLY124
AGLU198
AVAL200
AHOH1492
AHOH1528
AHOH1608

site_idAC4
Number of Residues7
Detailsbinding site for residue OXY A 804
ChainResidue
AARG108
ATOX111
AHIS112
AASP141
AHEM801
AHOH904
AHOH934

site_idAC5
Number of Residues4
Detailsbinding site for residue MPD A 805
ChainResidue
AASP83
APRO154
AHOH1415
AHOH1456

site_idAC6
Number of Residues3
Detailsbinding site for residue MRD A 806
ChainResidue
AALA290
ATHR323
AHOH1177

site_idAC7
Number of Residues20
Detailsbinding site for residue HEM B 801
ChainResidue
BGLY104
BLEU105
BTOX111
BVAL239
BLEU274
BILE275
BGLY278
BHIS279
BGLY282
BLYS283
BTHR284
BHIS285
BTHR323
BSER324
BTHR388
BTRP420
BOXY804
BHOH950
BHOH977
BHOH1140

site_idAC8
Number of Residues6
Detailsbinding site for residue NA B 802
ChainResidue
BGLY122
BARG123
BGLY124
BSER494
BHOH1132
BHOH1544

site_idAC9
Number of Residues5
Detailsbinding site for residue CL B 803
ChainResidue
BGLY124
BGLU198
BVAL200
BHOH1544
BHOH1665

site_idAD1
Number of Residues7
Detailsbinding site for residue OXY B 804
ChainResidue
BARG108
BTOX111
BHIS112
BASP141
BHEM801
BHOH907
BHOH935

site_idAD2
Number of Residues3
Detailsbinding site for residue MPD B 805
ChainResidue
BTHR323
BSER324
BHOH1504

site_idAD3
Number of Residues4
Detailsbinding site for residue MRD B 806
ChainResidue
BLYS158
BHOH1102
BHOH1480
BHOH1697

site_idAD4
Number of Residues4
Detailsbinding site for residue MPD B 807
ChainResidue
BASP373
BPHE375
BHOH1064
BHOH1205

site_idAD5
Number of Residues15
Detailsbinding site for residue ADP B 808
ChainResidue
BPRO573
BARG730
BHOH911
BHOH944
BHOH1032
BHOH1092
BHOH1139
BHOH1288
BHOH1318
BHOH1508
BASP222
BASP249
BALA252
BARG255
BTHR571

Functional Information from PROSITE/UniProt
site_idPS00435
Number of Residues11
DetailsPEROXIDASE_1 Peroxidases proximal heme-ligand signature. TVALIAGGHTF
ChainResidueDetails
ATHR271-PHE281

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_01961
ChainResidueDetails
AHIS112
BHIS112

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: axial binding residue => ECO:0000255|HAMAP-Rule:MF_01961
ChainResidueDetails
AHIS279
BHIS279

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Transition state stabilizer => ECO:0000255|HAMAP-Rule:MF_01961
ChainResidueDetails
AARG108
BARG108

site_idSWS_FT_FI4
Number of Residues2
DetailsCROSSLNK: Tryptophyl-tyrosyl-methioninium (Trp-Tyr) (with M-244) => ECO:0000255|HAMAP-Rule:MF_01961
ChainResidueDetails
ATOX111
BTOX111

site_idSWS_FT_FI5
Number of Residues4
DetailsCROSSLNK: Tryptophyl-tyrosyl-methioninium (Tyr-Met) (with W-91) => ECO:0000255|HAMAP-Rule:MF_01961
ChainResidueDetails
ATYR238
AMET264
BTYR238
BMET264

227344

PDB entries from 2024-11-13

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