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5QP0

PanDDA analysis group deposition -- Crystal Structure of DCP2 (NUDT20) in complex with Z454376544

Functional Information from GO Data
ChainGOidnamespacecontents
A0000184biological_processnuclear-transcribed mRNA catabolic process, nonsense-mediated decay
A0000290biological_processdeadenylation-dependent decapping of nuclear-transcribed mRNA
A0016787molecular_functionhydrolase activity
A0140933molecular_function5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] hydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue EDO A 301
ChainResidue
AALA142
APHE146
AASP152
ALYS154
AHOH443

site_idAC2
Number of Residues3
Detailsbinding site for residue EDO A 302
ChainResidue
AASN223
ALYS224
AACT305

site_idAC3
Number of Residues1
Detailsbinding site for residue DMS A 303
ChainResidue
ATRP199

site_idAC4
Number of Residues3
Detailsbinding site for residue ACT A 304
ChainResidue
ASER122
ATYR156
AHOH442

site_idAC5
Number of Residues4
Detailsbinding site for residue ACT A 305
ChainResidue
AARG209
APRO222
AASN223
AEDO302

site_idAC6
Number of Residues11
Detailsbinding site for residue LF4 A 306
ChainResidue
AVAL115
AGLY117
AALA120
ALYS121
ASER122
AGLY123
AGLY125
AGLU148
AILE194
APHE226
AMET227

Functional Information from PROSITE/UniProt
site_idPS00893
Number of Residues22
DetailsNUDIX_BOX Nudix box signature. GkvnkeEaphdCAaREVfEEtG
ChainResidueDetails
AGLY129-GLY150

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AGLU144
AGLU148

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:21406692
ChainResidueDetails
ASER246
ASER247

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:21406692, ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER249

226707

PDB entries from 2024-10-30

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