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5QOM

PanDDA analysis group deposition -- Crystal Structure of DCP2 (NUDT20) in complex with FMOPL000576a

Functional Information from GO Data
ChainGOidnamespacecontents
A0000184biological_processnuclear-transcribed mRNA catabolic process, nonsense-mediated decay
A0000290biological_processdeadenylation-dependent decapping of nuclear-transcribed mRNA
A0016787molecular_functionhydrolase activity
A0140933molecular_function5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] hydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue EDO A 301
ChainResidue
AALA142
AASP152
AHOH403
AHOH416

site_idAC2
Number of Residues4
Detailsbinding site for residue EDO A 302
ChainResidue
AASN223
ALYS224
AACT305
AHOH457

site_idAC3
Number of Residues2
Detailsbinding site for residue DMS A 303
ChainResidue
ATRP199
AASN111

site_idAC4
Number of Residues4
Detailsbinding site for residue ACT A 304
ChainResidue
ASER122
ATYR156
AARG195
AHOH414

site_idAC5
Number of Residues4
Detailsbinding site for residue ACT A 305
ChainResidue
AARG209
APRO222
AASN223
AEDO302

site_idAC6
Number of Residues8
Detailsbinding site for residue PEG A 306
ChainResidue
AVAL115
AGLY117
ALYS121
AGLY123
AGLY125
ALYS128
AGLU148
AMET227

site_idAC7
Number of Residues10
Detailsbinding site for residue LDV A 307
ChainResidue
APHE186
AASN187
APRO188
AARG191
AARG195
AASN196
AILE197
AGLU198
ATRP199
AHOH428

Functional Information from PROSITE/UniProt
site_idPS00893
Number of Residues22
DetailsNUDIX_BOX Nudix box signature. GkvnkeEaphdCAaREVfEEtG
ChainResidueDetails
AGLY129-GLY150

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AGLU144
AGLU148

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:21406692
ChainResidueDetails
ASER246
ASER247

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:21406692, ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER249

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PDB entries from 2024-07-17

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