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5QGS

PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of NUDT7 in complex with FMOPL000476a

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0009132biological_processnucleoside diphosphate metabolic process
A0010945molecular_functioncoenzyme A diphosphatase activity
A0016818molecular_functionhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
A0030145molecular_functionmanganese ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ACT A 301
ChainResidue
AGLY70
ATYR187
AGLN188
AHOH487

site_idAC2
Number of Residues3
Detailsbinding site for residue ACT A 302
ChainResidue
AHYP102
AVAL105
AHOH493

site_idAC3
Number of Residues5
Detailsbinding site for residue DMS A 303
ChainResidue
APHE133
AGLN134
AGLN136
AGLY99
AGLN104

site_idAC4
Number of Residues4
Detailsbinding site for residue DMS A 304
ChainResidue
AASP130
AHIS131
AASP144
AHOH501

site_idAC5
Number of Residues4
Detailsbinding site for residue H0D A 305
ChainResidue
AARG67
AILE116
AASP117
AILE122

Functional Information from PROSITE/UniProt
site_idPS01293
Number of Residues21
DetailsNUDIX_COA Nudix CoA signature. LFTvRSeklRrapGevcFPGG
ChainResidueDetails
ALEU57-GLY77

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues21
DetailsMotif: {"description":"Nudix box"}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"Q99P30","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsSite: {"description":"Important for coenzyme A binding","evidences":[{"source":"UniProtKB","id":"Q99P30","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues1
DetailsModified residue: {"description":"N6-succinyllysine","evidences":[{"source":"UniProtKB","id":"Q99P30","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

246905

PDB entries from 2025-12-31

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