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5QGK

PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of NUDT7 in complex with FMOPL000679a

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0009132biological_processnucleoside diphosphate metabolic process
A0010945molecular_functioncoenzyme A diphosphatase activity
A0016818molecular_functionhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
A0030145molecular_functionmanganese ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue ACT A 301
ChainResidue
AGLY70
AVAL72
ATYR187
AGLN188
AHOH411

site_idAC2
Number of Residues6
Detailsbinding site for residue DMS A 302
ChainResidue
AGLN134
AGLN136
AGLY99
AARG101
AGLN104
APHE133

site_idAC3
Number of Residues8
Detailsbinding site for residue H0S A 303
ChainResidue
ATYR41
AVAL43
APHE74
AGLY76
AMET192
AH0S304
AHOH462
AHOH471

site_idAC4
Number of Residues4
Detailsbinding site for residue H0S A 304
ChainResidue
ATYR41
AARG67
ACYS73
AH0S303

site_idAC5
Number of Residues7
Detailsbinding site for residue H0S A 305
ChainResidue
AASP18
ALYS21
AHIS103
AGLN104
AGLU106
ALEU128
AASP130

Functional Information from PROSITE/UniProt
site_idPS01293
Number of Residues21
DetailsNUDIX_COA Nudix CoA signature. LFTvRSeklRrapGevcFPGG
ChainResidueDetails
ALEU57-GLY77

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:Q99P30
ChainResidueDetails
AGLU93
AGLU97

site_idSWS_FT_FI2
Number of Residues1
DetailsSITE: Important for coenzyme A binding => ECO:0000250|UniProtKB:Q99P30
ChainResidueDetails
AARG67

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: N6-succinyllysine => ECO:0000250|UniProtKB:Q99P30
ChainResidueDetails
ALYS21

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PDB entries from 2024-07-10

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