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5PKC

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 97)

Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 401
ChainResidue
ACYS238
AHIS244
ACYS310
ACYS312

site_idAC2
Number of Residues5
Detailsbinding site for residue NI A 402
ChainResidue
AHIS192
AGLU194
AHIS280
AOGA404
AHOH575

site_idAC3
Number of Residues6
Detailsbinding site for residue MG A 403
ChainResidue
AASN65
AILE66
ASER67
AGLU68
AILE69
AVAL171

site_idAC4
Number of Residues14
Detailsbinding site for residue OGA A 404
ChainResidue
ATYR136
APHE189
AHIS192
AGLU194
ASER200
AASN202
ALYS210
ATRP212
AHIS280
AALA292
ANI402
AEDO412
AHOH575
AHOH605

site_idAC5
Number of Residues7
Detailsbinding site for residue EDO A 405
ChainResidue
ALYS150
AGLN151
ATRP152
AASN153
AHIS156
AHOH673
AHOH733

site_idAC6
Number of Residues3
Detailsbinding site for residue EDO A 406
ChainResidue
ATHR252
AARG263
AHOH573

site_idAC7
Number of Residues8
Detailsbinding site for residue EDO A 407
ChainResidue
AGLU224
AALA240
APHE241
ALEU242
ATYR279
ASER308
AHOH510
AHOH526

site_idAC8
Number of Residues7
Detailsbinding site for residue EDO A 408
ChainResidue
AASP64
AASN65
AILE66
ASER67
AGLU68
AARG82
AHOH667

site_idAC9
Number of Residues4
Detailsbinding site for residue EDO A 409
ChainResidue
APHE118
AILE264
ATHR265
AHOH567

site_idAD1
Number of Residues10
Detailsbinding site for residue EDO A 410
ChainResidue
ATRP57
ALYS58
AALA59
AARG60
ATYR63
ATYR203
AHOH505
AHOH519
AHOH564
AHOH648

site_idAD2
Number of Residues6
Detailsbinding site for residue EDO A 411
ChainResidue
ASER80
ATHR87
ACYS168
ALYS305
AHOH525
AHOH553

site_idAD3
Number of Residues6
Detailsbinding site for residue EDO A 412
ChainResidue
ATYR181
ASER200
AALA292
AASN294
AOGA404
AHOH575

site_idAD4
Number of Residues6
Detailsbinding site for residue SO4 A 413
ChainResidue
AARG102
AHIS103
AASN106
AHOH508
AHOH562
AHOH582

site_idAD5
Number of Residues8
Detailsbinding site for residue SO4 A 414
ChainResidue
AARG60
AGLU61
ATHR62
AASN65
AHOH517
AHOH574
AHOH635
AHOH802

site_idAD6
Number of Residues4
Detailsbinding site for residue SO4 A 415
ChainResidue
AARG123
ALYS124
ALYS127
AASN128

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:B2RXH2
ChainResidueDetails
ATYR136
AASN202
ALYS210
ALYS245

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000305|PubMed:26741168
ChainResidueDetails
AHIS192
AGLU194
AHIS280

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0007744|PDB:5F5A, ECO:0007744|PDB:5F5C
ChainResidueDetails
ACYS238
AHIS244
ACYS310
ACYS312

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: PolyADP-ribosyl glutamic acid => ECO:0000269|PubMed:23102699
ChainResidueDetails
AGLU26
AGLU27

227111

PDB entries from 2024-11-06

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