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5PHF

PanDDA analysis group deposition -- Crystal Structure of JMJD2D in complex with N09688a

Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 401
ChainResidue
ACYS238
AHIS244
ACYS310
ACYS312

site_idAC2
Number of Residues5
Detailsbinding site for residue NI A 402
ChainResidue
AHIS192
AGLU194
AHIS280
AOGA403
AHOH606

site_idAC3
Number of Residues12
Detailsbinding site for residue OGA A 403
ChainResidue
ATYR136
APHE189
AHIS192
AGLU194
ASER200
AASN202
ALYS210
AHIS280
ANI402
AEDO411
AHOH606
AHOH789

site_idAC4
Number of Residues7
Detailsbinding site for residue EDO A 404
ChainResidue
ALYS150
AGLN151
ATRP152
AASN153
AHIS156
AHOH582
AHOH682

site_idAC5
Number of Residues5
Detailsbinding site for residue EDO A 405
ChainResidue
ATHR252
ALYS255
AARG263
AURS419
AHOH690

site_idAC6
Number of Residues8
Detailsbinding site for residue EDO A 406
ChainResidue
AGLU224
AALA240
APHE241
ALEU242
ATYR279
ASER308
AHOH512
AHOH514

site_idAC7
Number of Residues7
Detailsbinding site for residue EDO A 407
ChainResidue
AASP64
AASN65
AILE66
ASER67
AGLU68
AARG82
AHOH699

site_idAC8
Number of Residues4
Detailsbinding site for residue EDO A 408
ChainResidue
APHE118
AILE264
ATHR265
AHOH550

site_idAC9
Number of Residues9
Detailsbinding site for residue EDO A 409
ChainResidue
ATRP57
ALYS58
AALA59
AARG60
ATYR63
ATYR203
AHOH510
AHOH626
AHOH681

site_idAD1
Number of Residues6
Detailsbinding site for residue EDO A 410
ChainResidue
ATHR87
ACYS168
APHE231
ALYS305
AHOH517
AHOH653

site_idAD2
Number of Residues6
Detailsbinding site for residue EDO A 411
ChainResidue
ATYR181
ASER200
AALA292
AASN294
AOGA403
AHOH606

site_idAD3
Number of Residues9
Detailsbinding site for residue EDO A 412
ChainResidue
AALA36
AGLU39
ATHR297
APRO298
AARG299
AHOH526
AHOH529
AHOH785
AHOH803

site_idAD4
Number of Residues6
Detailsbinding site for residue SO4 A 413
ChainResidue
AARG102
AHIS103
AASN106
AHOH515
AHOH630
AHOH776

site_idAD5
Number of Residues8
Detailsbinding site for residue SO4 A 414
ChainResidue
AARG60
AGLU61
ATHR62
AASN65
AHOH542
AHOH557
AHOH593
AHOH787

site_idAD6
Number of Residues4
Detailsbinding site for residue SO4 A 415
ChainResidue
AASN128
AARG123
ALYS124
ALYS127

site_idAD7
Number of Residues5
Detailsbinding site for residue SO4 A 416
ChainResidue
APRO113
ALYS124
AASN128
ATRP185
ALYS186

site_idAD8
Number of Residues8
Detailsbinding site for residue URS A 417
ChainResidue
AILE20
APHE21
ALYS255
AHOH605
AHOH635
AHOH637
AHOH878
AHOH918

site_idAD9
Number of Residues12
Detailsbinding site for residue URS A 418
ChainResidue
AASP32
ATHR159
ALEU163
ALYS166
AALA296
ATHR297
AHOH529
AHOH684
AHOH697
AHOH748
AHOH765
AHOH818

site_idAE1
Number of Residues11
Detailsbinding site for residue URS A 419
ChainResidue
AARG123
ATRP126
ALYS127
AEDO405
AHOH597
AHOH690
AHOH783
AHOH810
AHOH830
AHOH874
AHOH894

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:B2RXH2
ChainResidueDetails
ATYR136
AASN202
ALYS210
ALYS245

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000305|PubMed:26741168
ChainResidueDetails
AHIS192
AGLU194
AHIS280

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0007744|PDB:5F5A, ECO:0007744|PDB:5F5C
ChainResidueDetails
ACYS238
AHIS244
ACYS310
ACYS312

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: PolyADP-ribosyl glutamic acid => ECO:0000269|PubMed:23102699
ChainResidueDetails
AGLU26
AGLU27

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PDB entries from 2025-06-18

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