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5PHD

PanDDA analysis group deposition -- Crystal Structure of JMJD2D in complex with N09419a

Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 401
ChainResidue
ACYS238
AHIS244
ACYS310
ACYS312

site_idAC2
Number of Residues5
Detailsbinding site for residue NI A 402
ChainResidue
AHIS192
AGLU194
AHIS280
AOGA403
AHOH623

site_idAC3
Number of Residues13
Detailsbinding site for residue OGA A 403
ChainResidue
ATYR136
APHE189
AHIS192
AGLU194
ASER200
AASN202
ALYS210
ATRP212
AHIS280
ANI402
AEDO411
AHOH623
AHOH703

site_idAC4
Number of Residues7
Detailsbinding site for residue EDO A 404
ChainResidue
ALYS150
AGLN151
ATRP152
AASN153
AHIS156
AHOH536
AHOH660

site_idAC5
Number of Residues3
Detailsbinding site for residue EDO A 405
ChainResidue
ATHR252
AARG263
AHOH789

site_idAC6
Number of Residues7
Detailsbinding site for residue EDO A 406
ChainResidue
AGLU224
AALA240
APHE241
ALEU242
ATYR279
ASER308
AHOH507

site_idAC7
Number of Residues8
Detailsbinding site for residue EDO A 407
ChainResidue
AASP64
AASN65
AILE66
ASER67
AGLU68
AARG82
A4NC418
AHOH525

site_idAC8
Number of Residues5
Detailsbinding site for residue EDO A 408
ChainResidue
APHE118
AARG263
AILE264
ATHR265
AHOH529

site_idAC9
Number of Residues10
Detailsbinding site for residue EDO A 409
ChainResidue
ATRP57
ALYS58
AALA59
AARG60
ATYR63
ATYR203
AHOH505
AHOH508
AHOH564
AHOH686

site_idAD1
Number of Residues7
Detailsbinding site for residue EDO A 410
ChainResidue
ASER80
ATHR87
ACYS168
ALYS305
A4NC415
AHOH524
AHOH615

site_idAD2
Number of Residues5
Detailsbinding site for residue EDO A 411
ChainResidue
ATYR181
ASER200
AALA292
AASN294
AOGA403

site_idAD3
Number of Residues6
Detailsbinding site for residue SO4 A 412
ChainResidue
AARG102
AHIS103
AASN106
AHOH511
AHOH533
AHOH573

site_idAD4
Number of Residues4
Detailsbinding site for residue SO4 A 413
ChainResidue
AARG123
ALYS124
ALYS127
AASN128

site_idAD5
Number of Residues6
Detailsbinding site for residue SO4 A 414
ChainResidue
APRO113
ALYS124
AASN128
ATRP185
ALYS186
AHOH631

site_idAD6
Number of Residues14
Detailsbinding site for residue 4NC A 415
ChainResidue
AEDO410
AHOH524
AHOH615
AHOH654
AHOH723
ASER80
AVAL85
ATHR87
AGLU167
ACYS168
ALEU230
APHE231
AILE301
ALYS305

site_idAD7
Number of Residues10
Detailsbinding site for residue 4NC A 416
ChainResidue
ALYS25
AASN29
AGLU56
ATRP57
AGLN151
AHOH814
AHOH830
AHOH838
AHOH886
AHOH910

site_idAD8
Number of Residues14
Detailsbinding site for residue 4NC A 417
ChainResidue
AVAL78
ATYR89
ALYS91
ALYS305
AMET306
AGLN329
AGLU331
AARG332
AHOH510
AHOH512
AHOH695
AHOH819
AHOH839
AHOH848

site_idAD9
Number of Residues10
Detailsbinding site for residue 4NC A 418
ChainResidue
AARG82
ALEU230
AVAL253
AGLU256
AASN257
AEDO407
AHOH534
AHOH651
AHOH741
AHOH785

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:B2RXH2
ChainResidueDetails
ATYR136
AASN202
ALYS210
ALYS245

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000305|PubMed:26741168
ChainResidueDetails
AHIS192
AGLU194
AHIS280

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0007744|PDB:5F5A, ECO:0007744|PDB:5F5C
ChainResidueDetails
ACYS238
AHIS244
ACYS310
ACYS312

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: PolyADP-ribosyl glutamic acid => ECO:0000269|PubMed:23102699
ChainResidueDetails
AGLU26
AGLU27

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PDB entries from 2024-08-28

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