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5PH8

PanDDA analysis group deposition -- Crystal Structure of JMJD2D in complex with N09552a

Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 401
ChainResidue
ACYS238
AHIS244
ACYS310
ACYS312

site_idAC2
Number of Residues5
Detailsbinding site for residue NI A 402
ChainResidue
AHIS192
AGLU194
AHIS280
AOGA403
AHOH614

site_idAC3
Number of Residues13
Detailsbinding site for residue OGA A 403
ChainResidue
ATYR136
APHE189
AHIS192
AGLU194
ASER200
AASN202
ALYS210
ATRP212
AHIS280
ANI402
AEDO409
AHOH614
AHOH634

site_idAC4
Number of Residues7
Detailsbinding site for residue EDO A 404
ChainResidue
ALYS150
AGLN151
ATRP152
AASN153
AHIS156
AHOH590
AHOH636

site_idAC5
Number of Residues4
Detailsbinding site for residue EDO A 405
ChainResidue
ATHR252
ALYS255
AARG263
AHOH694

site_idAC6
Number of Residues4
Detailsbinding site for residue EDO A 406
ChainResidue
APHE118
AILE264
ATHR265
AHOH521

site_idAC7
Number of Residues10
Detailsbinding site for residue EDO A 407
ChainResidue
ATRP57
ALYS58
AALA59
AARG60
ATYR63
ATYR203
AHOH510
AHOH566
AHOH599
AHOH631

site_idAC8
Number of Residues7
Detailsbinding site for residue EDO A 408
ChainResidue
ASER80
ATHR87
ACYS168
ALYS305
A1XN415
AHOH534
AHOH730

site_idAC9
Number of Residues7
Detailsbinding site for residue EDO A 409
ChainResidue
ATYR179
ATYR181
ASER200
AALA292
AASN294
AOGA403
AHOH614

site_idAD1
Number of Residues6
Detailsbinding site for residue SO4 A 410
ChainResidue
AARG102
AHIS103
AASN106
AHOH506
AHOH518
AHOH642

site_idAD2
Number of Residues7
Detailsbinding site for residue SO4 A 411
ChainResidue
AARG60
AGLU61
ATHR62
AHOH509
AHOH522
AHOH638
AHOH639

site_idAD3
Number of Residues4
Detailsbinding site for residue SO4 A 412
ChainResidue
AARG123
ALYS124
ALYS127
AASN128

site_idAD4
Number of Residues5
Detailsbinding site for residue SO4 A 413
ChainResidue
APRO113
ALYS124
AASN128
ATRP185
ALYS186

site_idAD5
Number of Residues16
Detailsbinding site for residue PHT A 414
ChainResidue
AGLU224
AARG228
AGLY239
AALA240
APHE241
ALEU242
AARG243
ASER308
AHOH515
AHOH569
AHOH577
AHOH653
AHOH704
AHOH790
AHOH798
AHOH813

site_idAD6
Number of Residues15
Detailsbinding site for residue 1XN A 415
ChainResidue
ASER80
ATHR87
AGLU167
ACYS168
APHE231
APRO232
AGLY233
ASER234
AILE301
ALYS305
AEDO408
AHOH534
AHOH693
AHOH730
AHOH886

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues42
DetailsDomain: {"description":"JmjN","evidences":[{"source":"PROSITE-ProRule","id":"PRU00537","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues166
DetailsDomain: {"description":"JmjC","evidences":[{"source":"PROSITE-ProRule","id":"PRU00538","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"B2RXH2","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues3
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00538","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"26741168","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PDB","id":"5F5A","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5F5C","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues2
DetailsModified residue: {"description":"PolyADP-ribosyl glutamic acid","evidences":[{"source":"PubMed","id":"23102699","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

243083

PDB entries from 2025-10-15

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