5ON5
Crystal structure of NikA in complex with Fe-L2 (Fe-L2 (N-(2-hydroxy-3-methoxybenzyl)-N'-(2-thiomethylbenzyl)- N,N'-ethylenediamine diacetic acid) after dioxygen oxidation
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005515 | molecular_function | protein binding |
| A | 0015675 | biological_process | nickel cation transport |
| A | 0015833 | biological_process | peptide transport |
| A | 0016020 | cellular_component | membrane |
| A | 0016151 | molecular_function | nickel cation binding |
| A | 0020037 | molecular_function | heme binding |
| A | 0030288 | cellular_component | outer membrane-bounded periplasmic space |
| A | 0042597 | cellular_component | periplasmic space |
| A | 0043190 | cellular_component | ATP-binding cassette (ABC) transporter complex |
| A | 0046914 | molecular_function | transition metal ion binding |
| A | 0050919 | biological_process | negative chemotaxis |
| A | 0051540 | molecular_function | metal cluster binding |
| A | 0055052 | cellular_component | ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing |
| A | 0055085 | biological_process | transmembrane transport |
| A | 0098716 | biological_process | nickel cation import across plasma membrane |
| A | 1904680 | molecular_function | peptide transmembrane transporter activity |
| B | 0005515 | molecular_function | protein binding |
| B | 0015675 | biological_process | nickel cation transport |
| B | 0015833 | biological_process | peptide transport |
| B | 0016020 | cellular_component | membrane |
| B | 0016151 | molecular_function | nickel cation binding |
| B | 0020037 | molecular_function | heme binding |
| B | 0030288 | cellular_component | outer membrane-bounded periplasmic space |
| B | 0042597 | cellular_component | periplasmic space |
| B | 0043190 | cellular_component | ATP-binding cassette (ABC) transporter complex |
| B | 0046914 | molecular_function | transition metal ion binding |
| B | 0050919 | biological_process | negative chemotaxis |
| B | 0051540 | molecular_function | metal cluster binding |
| B | 0055052 | cellular_component | ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing |
| B | 0055085 | biological_process | transmembrane transport |
| B | 0098716 | biological_process | nickel cation import across plasma membrane |
| B | 1904680 | molecular_function | peptide transmembrane transporter activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 2 |
| Details | binding site for residue FE A 601 |
| Chain | Residue |
| A | 9YH602 |
| A | HOH1090 |
| site_id | AC2 |
| Number of Residues | 12 |
| Details | binding site for residue 9YH A 602 |
| Chain | Residue |
| A | FE601 |
| A | GOL610 |
| A | HOH835 |
| A | HOH844 |
| A | HOH930 |
| A | TYR22 |
| A | THR23 |
| A | MET27 |
| A | ARG97 |
| A | ARG137 |
| A | TRP398 |
| A | HIS416 |
| site_id | AC3 |
| Number of Residues | 6 |
| Details | binding site for residue GOL A 603 |
| Chain | Residue |
| A | TRP10 |
| A | PRO11 |
| A | GLY219 |
| A | ASN220 |
| A | GLY222 |
| A | GOL610 |
| site_id | AC4 |
| Number of Residues | 10 |
| Details | binding site for residue GOL A 604 |
| Chain | Residue |
| A | ASN270 |
| A | LYS306 |
| A | PRO307 |
| A | SER308 |
| A | HIS459 |
| A | ALA462 |
| A | HOH701 |
| A | HOH716 |
| A | HOH719 |
| A | HOH814 |
| site_id | AC5 |
| Number of Residues | 3 |
| Details | binding site for residue ACT A 605 |
| Chain | Residue |
| A | THR23 |
| A | GLN26 |
| A | HOH914 |
| site_id | AC6 |
| Number of Residues | 6 |
| Details | binding site for residue ACT A 606 |
| Chain | Residue |
| A | PHE147 |
| A | LYS148 |
| A | ASN149 |
| A | LYS157 |
| A | HOH779 |
| A | HOH789 |
| site_id | AC7 |
| Number of Residues | 4 |
| Details | binding site for residue ACT A 607 |
| Chain | Residue |
| A | ASP331 |
| A | ILE332 |
| A | ARG365 |
| B | LYS148 |
| site_id | AC8 |
| Number of Residues | 9 |
| Details | binding site for residue GOL A 608 |
| Chain | Residue |
| A | LEU92 |
| A | ARG95 |
| A | ILE107 |
| A | VAL108 |
| A | ASP109 |
| A | VAL110 |
| A | ASN281 |
| A | HOH702 |
| A | HOH816 |
| site_id | AC9 |
| Number of Residues | 6 |
| Details | binding site for residue GOL A 609 |
| Chain | Residue |
| A | ASN235 |
| A | TYR238 |
| A | PHE419 |
| A | GLN423 |
| A | HOH706 |
| A | HOH733 |
| site_id | AD1 |
| Number of Residues | 9 |
| Details | binding site for residue GOL A 610 |
| Chain | Residue |
| A | ASN220 |
| A | ILE246 |
| A | GLU247 |
| A | MET472 |
| A | ALA489 |
| A | 9YH602 |
| A | GOL603 |
| A | HOH738 |
| A | HOH1062 |
| site_id | AD2 |
| Number of Residues | 6 |
| Details | binding site for residue GOL A 611 |
| Chain | Residue |
| A | GLN361 |
| A | SER372 |
| A | LEU373 |
| A | HOH703 |
| A | HOH712 |
| B | LYS157 |
| site_id | AD3 |
| Number of Residues | 5 |
| Details | binding site for residue ACT A 612 |
| Chain | Residue |
| A | LYS52 |
| A | ARG68 |
| A | ASP69 |
| A | ASP70 |
| A | HOH730 |
| site_id | AD4 |
| Number of Residues | 2 |
| Details | binding site for residue ACT A 613 |
| Chain | Residue |
| A | LYS316 |
| B | LYS354 |
| site_id | AD5 |
| Number of Residues | 8 |
| Details | binding site for residue GOL A 614 |
| Chain | Residue |
| A | ASN302 |
| A | LEU303 |
| A | GLY304 |
| A | HOH736 |
| A | HOH751 |
| B | ALA230 |
| B | SER233 |
| B | LEU242 |
| site_id | AD6 |
| Number of Residues | 2 |
| Details | binding site for residue FE B 601 |
| Chain | Residue |
| B | 9YH602 |
| B | HOH1021 |
| site_id | AD7 |
| Number of Residues | 15 |
| Details | binding site for residue 9YH B 602 |
| Chain | Residue |
| B | GOL603 |
| B | GOL607 |
| B | HOH711 |
| B | HOH738 |
| B | HOH782 |
| B | HOH789 |
| B | TYR22 |
| B | THR23 |
| B | MET27 |
| B | ARG97 |
| B | TRP100 |
| B | ARG137 |
| B | TRP398 |
| B | THR490 |
| B | FE601 |
| site_id | AD8 |
| Number of Residues | 7 |
| Details | binding site for residue GOL B 603 |
| Chain | Residue |
| B | ASN220 |
| B | GLU247 |
| B | THR490 |
| B | 9YH602 |
| B | GOL604 |
| B | HOH726 |
| B | HOH867 |
| site_id | AD9 |
| Number of Residues | 7 |
| Details | binding site for residue GOL B 604 |
| Chain | Residue |
| B | PRO11 |
| B | ARG205 |
| B | GLY219 |
| B | ASN220 |
| B | GLY222 |
| B | GOL603 |
| B | HOH858 |
| site_id | AE1 |
| Number of Residues | 3 |
| Details | binding site for residue CL B 605 |
| Chain | Residue |
| B | LYS257 |
| B | ALA258 |
| B | HOH1135 |
| site_id | AE2 |
| Number of Residues | 3 |
| Details | binding site for residue CL B 606 |
| Chain | Residue |
| A | HOH945 |
| B | ARG457 |
| B | HOH998 |
| site_id | AE3 |
| Number of Residues | 10 |
| Details | binding site for residue GOL B 607 |
| Chain | Residue |
| B | TRP398 |
| B | SER410 |
| B | HIS416 |
| B | ALA417 |
| B | ASP418 |
| B | 9YH602 |
| B | HOH702 |
| B | HOH711 |
| B | HOH714 |
| B | HOH789 |
| site_id | AE4 |
| Number of Residues | 4 |
| Details | binding site for residue ACT B 608 |
| Chain | Residue |
| B | THR23 |
| B | PRO24 |
| B | GLN26 |
| B | HOH865 |
Functional Information from PROSITE/UniProt
| site_id | PS01040 |
| Number of Residues | 23 |
| Details | SBP_BACTERIAL_5 Bacterial extracellular solute-binding proteins, family 5 signature. AkswthseDgkTWtFtLRDDVKF |
| Chain | Residue | Details |
| A | ALA51-PHE73 |
