5OLK
Crystal structure of the ATP-cone-containing NrdB from Leeuwenhoekiella blandensis
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0004748 | molecular_function | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor |
| A | 0005524 | molecular_function | ATP binding |
| A | 0009263 | biological_process | deoxyribonucleotide biosynthetic process |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0004748 | molecular_function | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor |
| B | 0005524 | molecular_function | ATP binding |
| B | 0009263 | biological_process | deoxyribonucleotide biosynthetic process |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0046872 | molecular_function | metal ion binding |
| C | 0000166 | molecular_function | nucleotide binding |
| C | 0004748 | molecular_function | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor |
| C | 0005524 | molecular_function | ATP binding |
| C | 0009263 | biological_process | deoxyribonucleotide biosynthetic process |
| C | 0016491 | molecular_function | oxidoreductase activity |
| C | 0046872 | molecular_function | metal ion binding |
| D | 0000166 | molecular_function | nucleotide binding |
| D | 0004748 | molecular_function | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor |
| D | 0005524 | molecular_function | ATP binding |
| D | 0009263 | biological_process | deoxyribonucleotide biosynthetic process |
| D | 0016491 | molecular_function | oxidoreductase activity |
| D | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 14 |
| Details | binding site for residue DTP A 1001 |
| Chain | Residue |
| A | ILE9 |
| A | VAL71 |
| A | GLN72 |
| A | TYR91 |
| A | DTP1002 |
| A | MG1003 |
| A | LYS11 |
| A | ARG12 |
| A | PRO18 |
| A | PHE19 |
| A | VAL20 |
| A | LYS23 |
| A | ILE24 |
| A | VAL68 |
| site_id | AC2 |
| Number of Residues | 14 |
| Details | binding site for residue DTP A 1002 |
| Chain | Residue |
| A | ARG12 |
| A | ALA27 |
| A | ASN30 |
| A | ALA31 |
| A | GLN72 |
| A | ALA90 |
| A | TYR91 |
| A | TYR94 |
| A | ARG95 |
| A | ARG98 |
| A | ARG102 |
| A | DTP1001 |
| A | MG1003 |
| A | HOH1104 |
| site_id | AC3 |
| Number of Residues | 2 |
| Details | binding site for residue MG A 1003 |
| Chain | Residue |
| A | DTP1001 |
| A | DTP1002 |
| site_id | AC4 |
| Number of Residues | 7 |
| Details | binding site for residue MN A 1004 |
| Chain | Residue |
| A | GLU200 |
| A | GLU263 |
| A | GLU298 |
| A | HIS301 |
| A | MN1005 |
| A | HOH1121 |
| A | HOH1126 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | binding site for residue MN A 1005 |
| Chain | Residue |
| A | GLU170 |
| A | GLU200 |
| A | HIS203 |
| A | GLU298 |
| A | MN1004 |
| A | HOH1126 |
| site_id | AC6 |
| Number of Residues | 4 |
| Details | binding site for residue TRS A 1006 |
| Chain | Residue |
| A | PHE107 |
| A | ARG183 |
| A | PRO185 |
| A | ASP248 |
| site_id | AC7 |
| Number of Residues | 14 |
| Details | binding site for residue DTP B 1001 |
| Chain | Residue |
| B | ILE9 |
| B | LYS11 |
| B | ARG12 |
| B | PRO18 |
| B | PHE19 |
| B | VAL20 |
| B | LYS23 |
| B | ILE24 |
| B | VAL68 |
| B | VAL71 |
| B | GLN72 |
| B | TYR91 |
| B | DTP1002 |
| B | MG1003 |
| site_id | AC8 |
| Number of Residues | 15 |
| Details | binding site for residue DTP B 1002 |
| Chain | Residue |
| B | ARG12 |
| B | ALA27 |
| B | ASN30 |
| B | ALA31 |
| B | ALA34 |
| B | GLN72 |
| B | ALA90 |
| B | TYR91 |
| B | TYR94 |
| B | ARG95 |
| B | ARG98 |
| B | ARG102 |
| B | DTP1001 |
| B | MG1003 |
| B | HOH1106 |
| site_id | AC9 |
| Number of Residues | 2 |
| Details | binding site for residue MG B 1003 |
| Chain | Residue |
| B | DTP1001 |
| B | DTP1002 |
| site_id | AD1 |
| Number of Residues | 5 |
| Details | binding site for residue MN B 1004 |
| Chain | Residue |
| B | GLU170 |
| B | GLU200 |
| B | HIS203 |
| B | GLU298 |
| B | MN1005 |
| site_id | AD2 |
| Number of Residues | 6 |
| Details | binding site for residue MN B 1005 |
| Chain | Residue |
| B | GLU200 |
| B | GLU263 |
| B | GLU298 |
| B | HIS301 |
| B | MN1004 |
| B | HOH1115 |
| site_id | AD3 |
| Number of Residues | 3 |
| Details | binding site for residue TRS B 1006 |
| Chain | Residue |
| B | PHE107 |
| B | ARG183 |
| B | ASP248 |
| site_id | AD4 |
| Number of Residues | 16 |
| Details | binding site for residue DTP C 1001 |
| Chain | Residue |
| C | ILE24 |
| C | VAL68 |
| C | VAL71 |
| C | GLN72 |
| C | TYR91 |
| C | DTP1002 |
| C | MG1003 |
| C | HOH1102 |
| C | HOH1104 |
| C | ILE9 |
| C | LYS11 |
| C | ARG12 |
| C | PRO18 |
| C | PHE19 |
| C | VAL20 |
| C | LYS23 |
| site_id | AD5 |
| Number of Residues | 15 |
| Details | binding site for residue DTP C 1002 |
| Chain | Residue |
| C | ARG12 |
| C | ALA27 |
| C | ASN30 |
| C | ALA31 |
| C | GLN72 |
| C | ALA90 |
| C | TYR91 |
| C | TYR94 |
| C | ARG95 |
| C | ARG98 |
| C | ARG102 |
| C | DTP1001 |
| C | MG1003 |
| C | HOH1103 |
| C | HOH1108 |
| site_id | AD6 |
| Number of Residues | 2 |
| Details | binding site for residue MG C 1003 |
| Chain | Residue |
| C | DTP1001 |
| C | DTP1002 |
| site_id | AD7 |
| Number of Residues | 6 |
| Details | binding site for residue MN C 1004 |
| Chain | Residue |
| C | GLU170 |
| C | GLU200 |
| C | HIS203 |
| C | GLU298 |
| C | MN1005 |
| C | HOH1128 |
| site_id | AD8 |
| Number of Residues | 7 |
| Details | binding site for residue MN C 1005 |
| Chain | Residue |
| C | GLU200 |
| C | GLU263 |
| C | GLU298 |
| C | HIS301 |
| C | MN1004 |
| C | HOH1115 |
| C | HOH1128 |
| site_id | AD9 |
| Number of Residues | 4 |
| Details | binding site for residue TRS C 1006 |
| Chain | Residue |
| C | PHE107 |
| C | HIS182 |
| C | ARG183 |
| C | ASP248 |
| site_id | AE1 |
| Number of Residues | 14 |
| Details | binding site for residue DTP D 1001 |
| Chain | Residue |
| D | ILE9 |
| D | LYS11 |
| D | ARG12 |
| D | PRO18 |
| D | PHE19 |
| D | VAL20 |
| D | LYS23 |
| D | ILE24 |
| D | VAL68 |
| D | VAL71 |
| D | GLN72 |
| D | TYR91 |
| D | DTP1002 |
| D | MG1003 |
| site_id | AE2 |
| Number of Residues | 13 |
| Details | binding site for residue DTP D 1002 |
| Chain | Residue |
| D | ARG12 |
| D | ALA27 |
| D | ASN30 |
| D | ALA31 |
| D | GLN72 |
| D | ALA90 |
| D | TYR91 |
| D | TYR94 |
| D | ARG95 |
| D | ARG98 |
| D | ARG102 |
| D | DTP1001 |
| D | MG1003 |
| site_id | AE3 |
| Number of Residues | 2 |
| Details | binding site for residue MG D 1003 |
| Chain | Residue |
| D | DTP1001 |
| D | DTP1002 |
| site_id | AE4 |
| Number of Residues | 4 |
| Details | binding site for residue MN D 1004 |
| Chain | Residue |
| D | GLU170 |
| D | GLU200 |
| D | HIS203 |
| D | GLU298 |
| site_id | AE5 |
| Number of Residues | 6 |
| Details | binding site for residue MN D 1005 |
| Chain | Residue |
| D | GLU200 |
| D | GLU263 |
| D | GLU298 |
| D | HIS301 |
| D | HOH1127 |
| D | HOH1130 |
| site_id | AE6 |
| Number of Residues | 3 |
| Details | binding site for residue TRS D 1006 |
| Chain | Residue |
| D | PHE107 |
| D | ASP246 |
| D | ASP248 |
