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5O6J

Human NMT1 in complex with myristoyl-CoA and inhibitor IMP-1031

Functional Information from GO Data
ChainGOidnamespacecontents
A0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
A0006499biological_processN-terminal protein myristoylation
B0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
B0006499biological_processN-terminal protein myristoylation
Functional Information from PDB Data
site_idAC1
Number of Residues34
Detailsbinding site for residue MYA A 2001
ChainResidue
ATYR117
ACYS249
AVAL250
AARG255
ASER256
ALYS257
AARG258
AVAL259
AALA260
APRO261
ATHR268
AGLN118
APHE277
ATYR281
ATHR282
ALEU287
ATYR479
AMG2005
AHOH2140
AHOH2154
AHOH2174
AHOH2182
APHE119
AHOH2228
AHOH2279
AHOH2312
AHOH2367
AHOH2403
ATRP120
AASN179
ATYR180
AVAL181
APHE247
ALEU248

site_idAC2
Number of Residues7
Detailsbinding site for residue PO4 A 2002
ChainResidue
AGLU139
ALYS142
AHOH2119
AHOH2165
AHOH2216
AHOH2238
AHOH2239

site_idAC3
Number of Residues10
Detailsbinding site for residue PO4 A 2003
ChainResidue
ATYR150
ATHR151
AVAL262
AARG265
AALA336
AGLY337
ALEU338
AHOH2108
AHOH2141
AHOH2405

site_idAC4
Number of Residues6
Detailsbinding site for residue PO4 A 2004
ChainResidue
AGLN118
APHE119
AARG258
AARG265
ALYS334
AHOH2176

site_idAC5
Number of Residues6
Detailsbinding site for residue MG A 2005
ChainResidue
ALEU254
ASER256
ALYS257
AARG258
AVAL259
AMYA2001

site_idAC6
Number of Residues16
Detailsbinding site for residue 9M8 A 2006
ChainResidue
AVAL181
APHE188
AARG189
APHE190
ATYR192
ATHR282
AGLY284
ATYR296
ATRP297
AHIS298
ASER405
ATYR420
AASN451
ALEU453
ALEU495
AGLN496

site_idAC7
Number of Residues37
Detailsbinding site for residue MYA B 2001
ChainResidue
BTHR268
BVAL271
BPHE277
BTYR281
BTHR282
BLEU287
BTYR479
BMG2005
BHOH2129
BHOH2166
BHOH2183
BHOH2200
BHOH2282
BHOH2287
BHOH2343
BHOH2370
BHOH2425
BLYS114
BTYR117
BGLN118
BPHE119
BTRP120
BASN179
BTYR180
BVAL181
BASN246
BPHE247
BLEU248
BCYS249
BVAL250
BARG255
BSER256
BLYS257
BARG258
BVAL259
BALA260
BPRO261

site_idAC8
Number of Residues7
Detailsbinding site for residue PO4 B 2002
ChainResidue
BGLU139
BLYS142
BHOH2111
BHOH2145
BHOH2199
BHOH2281
BHOH2324

site_idAC9
Number of Residues8
Detailsbinding site for residue PO4 B 2003
ChainResidue
BTYR150
BTHR151
BARG265
BALA336
BGLY337
BLEU338
BHOH2107
BHOH2152

site_idAD1
Number of Residues7
Detailsbinding site for residue PO4 B 2004
ChainResidue
BGLN118
BPHE119
BARG258
BPRO261
BARG265
BLYS334
BHOH2341

site_idAD2
Number of Residues6
Detailsbinding site for residue MG B 2005
ChainResidue
BLEU254
BSER256
BLYS257
BARG258
BVAL259
BMYA2001

site_idAD3
Number of Residues17
Detailsbinding site for residue 9M8 B 2006
ChainResidue
BVAL181
BASP183
BPHE188
BPHE190
BTYR192
BASN246
BTHR282
BGLY284
BTYR296
BTRP297
BHIS298
BSER405
BTYR420
BASN451
BLEU453
BLEU495
BGLN496

Functional Information from PROSITE/UniProt
site_idPS00975
Number of Residues9
DetailsNMT_1 Myristoyl-CoA:protein N-myristoyltransferase signature 1. EINFLCvHK
ChainResidueDetails
AGLU244-LYS252

site_idPS00976
Number of Residues7
DetailsNMT_2 Myristoyl-CoA:protein N-myristoyltransferase signature 2. KFGiGDG
ChainResidueDetails
ALYS466-GLY472

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:25255805, ECO:0000269|PubMed:32111831, ECO:0000269|Ref.19
ChainResidueDetails
AARG339
APRO340
BLEU198
BLEU338
BARG339
BPRO340
ALEU198
ALEU338

site_idSWS_FT_FI2
Number of Residues10
DetailsBINDING: BINDING => ECO:0000269|PubMed:25255805, ECO:0000269|PubMed:32103017, ECO:0000269|PubMed:32111831, ECO:0000269|Ref.19
ChainResidueDetails
AARG328
APRO330
AALA336
BTRP199
BALA200
BARG328
BPRO330
BALA336
ATRP199
AALA200

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:32103017
ChainResidueDetails
ATYR327
BTYR327

site_idSWS_FT_FI4
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:25255805, ECO:0000269|Ref.19
ChainResidueDetails
ALEU329
BLEU329

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:O70310
ChainResidueDetails
AGLU111
BGLU111

site_idSWS_FT_FI6
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:16964243, ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:21406692, ECO:0007744|PubMed:23186163, ECO:0007744|PubMed:24275569
ChainResidueDetails
ALYS127
BLYS127

site_idSWS_FT_FI7
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163
ChainResidueDetails
ALEU163
BLEU163

220472

PDB entries from 2024-05-29

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