5NV3
Structure of Rubisco from Rhodobacter sphaeroides in complex with CABP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000287 | molecular_function | magnesium ion binding |
| A | 0004497 | molecular_function | monooxygenase activity |
| A | 0015977 | biological_process | carbon fixation |
| A | 0015979 | biological_process | photosynthesis |
| A | 0016829 | molecular_function | lyase activity |
| A | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| A | 0019253 | biological_process | reductive pentose-phosphate cycle |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0000287 | molecular_function | magnesium ion binding |
| B | 0004497 | molecular_function | monooxygenase activity |
| B | 0015977 | biological_process | carbon fixation |
| B | 0015979 | biological_process | photosynthesis |
| B | 0016829 | molecular_function | lyase activity |
| B | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| B | 0019253 | biological_process | reductive pentose-phosphate cycle |
| B | 0046872 | molecular_function | metal ion binding |
| C | 0000287 | molecular_function | magnesium ion binding |
| C | 0004497 | molecular_function | monooxygenase activity |
| C | 0015977 | biological_process | carbon fixation |
| C | 0015979 | biological_process | photosynthesis |
| C | 0016829 | molecular_function | lyase activity |
| C | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| C | 0019253 | biological_process | reductive pentose-phosphate cycle |
| C | 0046872 | molecular_function | metal ion binding |
| D | 0000287 | molecular_function | magnesium ion binding |
| D | 0004497 | molecular_function | monooxygenase activity |
| D | 0015977 | biological_process | carbon fixation |
| D | 0015979 | biological_process | photosynthesis |
| D | 0016829 | molecular_function | lyase activity |
| D | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| D | 0019253 | biological_process | reductive pentose-phosphate cycle |
| D | 0046872 | molecular_function | metal ion binding |
| E | 0000287 | molecular_function | magnesium ion binding |
| E | 0004497 | molecular_function | monooxygenase activity |
| E | 0015977 | biological_process | carbon fixation |
| E | 0015979 | biological_process | photosynthesis |
| E | 0016829 | molecular_function | lyase activity |
| E | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| E | 0019253 | biological_process | reductive pentose-phosphate cycle |
| E | 0046872 | molecular_function | metal ion binding |
| F | 0000287 | molecular_function | magnesium ion binding |
| F | 0004497 | molecular_function | monooxygenase activity |
| F | 0015977 | biological_process | carbon fixation |
| F | 0015979 | biological_process | photosynthesis |
| F | 0016829 | molecular_function | lyase activity |
| F | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| F | 0019253 | biological_process | reductive pentose-phosphate cycle |
| F | 0046872 | molecular_function | metal ion binding |
| G | 0000287 | molecular_function | magnesium ion binding |
| G | 0004497 | molecular_function | monooxygenase activity |
| G | 0015977 | biological_process | carbon fixation |
| G | 0015979 | biological_process | photosynthesis |
| G | 0016829 | molecular_function | lyase activity |
| G | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| G | 0019253 | biological_process | reductive pentose-phosphate cycle |
| G | 0046872 | molecular_function | metal ion binding |
| H | 0000287 | molecular_function | magnesium ion binding |
| H | 0004497 | molecular_function | monooxygenase activity |
| H | 0015977 | biological_process | carbon fixation |
| H | 0015979 | biological_process | photosynthesis |
| H | 0016829 | molecular_function | lyase activity |
| H | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| H | 0019253 | biological_process | reductive pentose-phosphate cycle |
| H | 0046872 | molecular_function | metal ion binding |
| I | 0015977 | biological_process | carbon fixation |
| I | 0015979 | biological_process | photosynthesis |
| I | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| I | 0019253 | biological_process | reductive pentose-phosphate cycle |
| J | 0015977 | biological_process | carbon fixation |
| J | 0015979 | biological_process | photosynthesis |
| J | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| J | 0019253 | biological_process | reductive pentose-phosphate cycle |
| K | 0015977 | biological_process | carbon fixation |
| K | 0015979 | biological_process | photosynthesis |
| K | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| K | 0019253 | biological_process | reductive pentose-phosphate cycle |
| L | 0015977 | biological_process | carbon fixation |
| L | 0015979 | biological_process | photosynthesis |
| L | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| L | 0019253 | biological_process | reductive pentose-phosphate cycle |
| M | 0015977 | biological_process | carbon fixation |
| M | 0015979 | biological_process | photosynthesis |
| M | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| M | 0019253 | biological_process | reductive pentose-phosphate cycle |
| N | 0015977 | biological_process | carbon fixation |
| N | 0015979 | biological_process | photosynthesis |
| N | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| N | 0019253 | biological_process | reductive pentose-phosphate cycle |
| O | 0015977 | biological_process | carbon fixation |
| O | 0015979 | biological_process | photosynthesis |
| O | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| O | 0019253 | biological_process | reductive pentose-phosphate cycle |
| P | 0015977 | biological_process | carbon fixation |
| P | 0015979 | biological_process | photosynthesis |
| P | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| P | 0019253 | biological_process | reductive pentose-phosphate cycle |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 20 |
| Details | binding site for residue CAP A 1001 |
| Chain | Residue |
| A | THR175 |
| A | LEU336 |
| A | SER380 |
| A | GLY381 |
| A | GLY382 |
| A | GLY404 |
| A | GLY405 |
| A | MG1002 |
| E | GLU62 |
| E | THR67 |
| E | TRP68 |
| A | LYS177 |
| E | ASN125 |
| A | LYS179 |
| A | KCX203 |
| A | GLU206 |
| A | HIS295 |
| A | ARG296 |
| A | HIS328 |
| A | LYS335 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | binding site for residue MG A 1002 |
| Chain | Residue |
| A | LYS179 |
| A | KCX203 |
| A | ASP205 |
| A | GLU206 |
| A | CAP1001 |
| site_id | AC3 |
| Number of Residues | 20 |
| Details | binding site for residue CAP B 1001 |
| Chain | Residue |
| B | THR175 |
| B | LYS177 |
| B | LYS179 |
| B | KCX203 |
| B | GLU206 |
| B | HIS295 |
| B | ARG296 |
| B | HIS328 |
| B | LYS335 |
| B | LEU336 |
| B | SER380 |
| B | GLY381 |
| B | GLY382 |
| B | GLY404 |
| B | GLY405 |
| B | MG1002 |
| F | GLU62 |
| F | THR67 |
| F | TRP68 |
| F | ASN125 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | binding site for residue MG B 1002 |
| Chain | Residue |
| B | LYS179 |
| B | KCX203 |
| B | ASP205 |
| B | GLU206 |
| B | CAP1001 |
| site_id | AC5 |
| Number of Residues | 20 |
| Details | binding site for residue CAP C 1001 |
| Chain | Residue |
| C | THR175 |
| C | LYS177 |
| C | LYS179 |
| C | KCX203 |
| C | GLU206 |
| C | HIS295 |
| C | ARG296 |
| C | HIS328 |
| C | LYS335 |
| C | LEU336 |
| C | SER380 |
| C | GLY381 |
| C | GLY382 |
| C | GLY404 |
| C | GLY405 |
| C | MG1002 |
| G | GLU62 |
| G | THR67 |
| G | TRP68 |
| G | ASN125 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | binding site for residue MG C 1002 |
| Chain | Residue |
| C | LYS179 |
| C | KCX203 |
| C | ASP205 |
| C | GLU206 |
| C | CAP1001 |
| site_id | AC7 |
| Number of Residues | 20 |
| Details | binding site for residue CAP D 1001 |
| Chain | Residue |
| D | THR175 |
| D | LYS177 |
| D | LYS179 |
| D | KCX203 |
| D | GLU206 |
| D | HIS295 |
| D | ARG296 |
| D | HIS328 |
| D | LYS335 |
| D | LEU336 |
| D | SER380 |
| D | GLY381 |
| D | GLY382 |
| D | GLY404 |
| D | GLY405 |
| D | MG1002 |
| H | GLU62 |
| H | THR67 |
| H | TRP68 |
| H | ASN125 |
| site_id | AC8 |
| Number of Residues | 5 |
| Details | binding site for residue MG D 1002 |
| Chain | Residue |
| D | CAP1001 |
| D | LYS179 |
| D | KCX203 |
| D | ASP205 |
| D | GLU206 |
| site_id | AC9 |
| Number of Residues | 21 |
| Details | binding site for residue CAP E 1001 |
| Chain | Residue |
| A | GLU62 |
| A | THR67 |
| A | TRP68 |
| A | ASN125 |
| E | THR175 |
| E | LYS177 |
| E | LYS179 |
| E | KCX203 |
| E | GLU206 |
| E | HIS295 |
| E | ARG296 |
| E | HIS299 |
| E | HIS328 |
| E | LYS335 |
| E | LEU336 |
| E | SER380 |
| E | GLY381 |
| E | GLY382 |
| E | GLY404 |
| E | GLY405 |
| E | MG1002 |
| site_id | AD1 |
| Number of Residues | 5 |
| Details | binding site for residue MG E 1002 |
| Chain | Residue |
| E | LYS179 |
| E | KCX203 |
| E | ASP205 |
| E | GLU206 |
| E | CAP1001 |
| site_id | AD2 |
| Number of Residues | 20 |
| Details | binding site for residue CAP F 1001 |
| Chain | Residue |
| B | GLU62 |
| B | THR67 |
| B | TRP68 |
| B | ASN125 |
| F | THR175 |
| F | LYS177 |
| F | LYS179 |
| F | KCX203 |
| F | GLU206 |
| F | HIS295 |
| F | ARG296 |
| F | HIS328 |
| F | LYS335 |
| F | LEU336 |
| F | SER380 |
| F | GLY381 |
| F | GLY382 |
| F | GLY404 |
| F | GLY405 |
| F | MG1002 |
| site_id | AD3 |
| Number of Residues | 5 |
| Details | binding site for residue MG F 1002 |
| Chain | Residue |
| F | LYS179 |
| F | KCX203 |
| F | ASP205 |
| F | GLU206 |
| F | CAP1001 |
| site_id | AD4 |
| Number of Residues | 20 |
| Details | binding site for residue CAP G 1001 |
| Chain | Residue |
| C | GLU62 |
| C | THR67 |
| C | TRP68 |
| C | ASN125 |
| G | THR175 |
| G | LYS177 |
| G | LYS179 |
| G | KCX203 |
| G | GLU206 |
| G | HIS295 |
| G | ARG296 |
| G | HIS328 |
| G | LYS335 |
| G | LEU336 |
| G | SER380 |
| G | GLY381 |
| G | GLY382 |
| G | GLY404 |
| G | GLY405 |
| G | MG1002 |
| site_id | AD5 |
| Number of Residues | 5 |
| Details | binding site for residue MG G 1002 |
| Chain | Residue |
| G | LYS179 |
| G | KCX203 |
| G | ASP205 |
| G | GLU206 |
| G | CAP1001 |
| site_id | AD6 |
| Number of Residues | 20 |
| Details | binding site for residue CAP H 1001 |
| Chain | Residue |
| D | GLU62 |
| D | THR67 |
| D | TRP68 |
| D | ASN125 |
| H | THR175 |
| H | LYS177 |
| H | LYS179 |
| H | KCX203 |
| H | GLU206 |
| H | HIS295 |
| H | ARG296 |
| H | HIS328 |
| H | LYS335 |
| H | LEU336 |
| H | SER380 |
| H | GLY381 |
| H | GLY382 |
| H | GLY404 |
| H | GLY405 |
| H | MG1002 |
| site_id | AD7 |
| Number of Residues | 5 |
| Details | binding site for residue MG H 1002 |
| Chain | Residue |
| H | LYS179 |
| H | KCX203 |
| H | ASP205 |
| H | GLU206 |
| H | CAP1001 |
Functional Information from PROSITE/UniProt
| site_id | PS00157 |
| Number of Residues | 9 |
| Details | RUBISCO_LARGE Ribulose bisphosphate carboxylase large chain active site. GlDFmKdDE |
| Chain | Residue | Details |
| A | GLY198-GLU206 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 16 |
| Details | ACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_01338 |
| Chain | Residue | Details |
| A | LYS177 | |
| E | HIS295 | |
| F | LYS177 | |
| F | HIS295 | |
| G | LYS177 | |
| G | HIS295 | |
| H | LYS177 | |
| H | HIS295 | |
| A | HIS295 | |
| B | LYS177 | |
| B | HIS295 | |
| C | LYS177 | |
| C | HIS295 | |
| D | LYS177 | |
| D | HIS295 | |
| E | LYS177 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 8 |
| Details | BINDING: in homodimeric partner => ECO:0000255|HAMAP-Rule:MF_01338 |
| Chain | Residue | Details |
| A | ASN125 | |
| B | ASN125 | |
| C | ASN125 | |
| D | ASN125 | |
| E | ASN125 | |
| F | ASN125 | |
| G | ASN125 | |
| H | ASN125 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 56 |
| Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01338 |
| Chain | Residue | Details |
| A | THR175 | |
| B | ASP205 | |
| B | GLU206 | |
| B | ARG296 | |
| B | HIS328 | |
| B | SER380 | |
| C | THR175 | |
| C | LYS179 | |
| C | ASP205 | |
| C | GLU206 | |
| C | ARG296 | |
| A | LYS179 | |
| C | HIS328 | |
| C | SER380 | |
| D | THR175 | |
| D | LYS179 | |
| D | ASP205 | |
| D | GLU206 | |
| D | ARG296 | |
| D | HIS328 | |
| D | SER380 | |
| E | THR175 | |
| A | ASP205 | |
| E | LYS179 | |
| E | ASP205 | |
| E | GLU206 | |
| E | ARG296 | |
| E | HIS328 | |
| E | SER380 | |
| F | THR175 | |
| F | LYS179 | |
| F | ASP205 | |
| F | GLU206 | |
| A | GLU206 | |
| F | ARG296 | |
| F | HIS328 | |
| F | SER380 | |
| G | THR175 | |
| G | LYS179 | |
| G | ASP205 | |
| G | GLU206 | |
| G | ARG296 | |
| G | HIS328 | |
| G | SER380 | |
| A | ARG296 | |
| H | THR175 | |
| H | LYS179 | |
| H | ASP205 | |
| H | GLU206 | |
| H | ARG296 | |
| H | HIS328 | |
| H | SER380 | |
| A | HIS328 | |
| A | SER380 | |
| B | THR175 | |
| B | LYS179 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 8 |
| Details | BINDING: via carbamate group => ECO:0000255|HAMAP-Rule:MF_01338 |
| Chain | Residue | Details |
| A | KCX203 | |
| B | KCX203 | |
| C | KCX203 | |
| D | KCX203 | |
| E | KCX203 | |
| F | KCX203 | |
| G | KCX203 | |
| H | KCX203 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 8 |
| Details | SITE: Transition state stabilizer => ECO:0000255|HAMAP-Rule:MF_01338 |
| Chain | Residue | Details |
| A | LYS335 | |
| B | LYS335 | |
| C | LYS335 | |
| D | LYS335 | |
| E | LYS335 | |
| F | LYS335 | |
| G | LYS335 | |
| H | LYS335 |
| site_id | SWS_FT_FI6 |
| Number of Residues | 8 |
| Details | MOD_RES: N6-carboxylysine => ECO:0000255|HAMAP-Rule:MF_01338 |
| Chain | Residue | Details |
| A | KCX203 | |
| B | KCX203 | |
| C | KCX203 | |
| D | KCX203 | |
| E | KCX203 | |
| F | KCX203 | |
| G | KCX203 | |
| H | KCX203 |
