Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

5NV3

Structure of Rubisco from Rhodobacter sphaeroides in complex with CABP

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000287	molecular_function	magnesium ion binding
A	0015977	biological_process	carbon fixation
A	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
A	0019253	biological_process	reductive pentose-phosphate cycle
B	0000287	molecular_function	magnesium ion binding
B	0015977	biological_process	carbon fixation
B	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
B	0019253	biological_process	reductive pentose-phosphate cycle
C	0000287	molecular_function	magnesium ion binding
C	0015977	biological_process	carbon fixation
C	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
C	0019253	biological_process	reductive pentose-phosphate cycle
D	0000287	molecular_function	magnesium ion binding
D	0015977	biological_process	carbon fixation
D	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
D	0019253	biological_process	reductive pentose-phosphate cycle
E	0000287	molecular_function	magnesium ion binding
E	0015977	biological_process	carbon fixation
E	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
E	0019253	biological_process	reductive pentose-phosphate cycle
F	0000287	molecular_function	magnesium ion binding
F	0015977	biological_process	carbon fixation
F	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
F	0019253	biological_process	reductive pentose-phosphate cycle
G	0000287	molecular_function	magnesium ion binding
G	0015977	biological_process	carbon fixation
G	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
G	0019253	biological_process	reductive pentose-phosphate cycle
H	0000287	molecular_function	magnesium ion binding
H	0015977	biological_process	carbon fixation
H	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
H	0019253	biological_process	reductive pentose-phosphate cycle
I	0015977	biological_process	carbon fixation
I	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
I	0019253	biological_process	reductive pentose-phosphate cycle
J	0015977	biological_process	carbon fixation
J	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
J	0019253	biological_process	reductive pentose-phosphate cycle
K	0015977	biological_process	carbon fixation
K	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
K	0019253	biological_process	reductive pentose-phosphate cycle
L	0015977	biological_process	carbon fixation
L	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
L	0019253	biological_process	reductive pentose-phosphate cycle
M	0015977	biological_process	carbon fixation
M	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
M	0019253	biological_process	reductive pentose-phosphate cycle
N	0015977	biological_process	carbon fixation
N	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
N	0019253	biological_process	reductive pentose-phosphate cycle
O	0015977	biological_process	carbon fixation
O	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
O	0019253	biological_process	reductive pentose-phosphate cycle
P	0015977	biological_process	carbon fixation
P	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
P	0019253	biological_process	reductive pentose-phosphate cycle

Functional Information from PDB Data

site_id	AC1
Number of Residues	20
Details	binding site for residue CAP A 1001

Chain	Residue
A	THR175
A	LEU336
A	SER380
A	GLY381
A	GLY382
A	GLY404
A	GLY405
A	MG1002
E	GLU62
E	THR67
E	TRP68
A	LYS177
E	ASN125
A	LYS179
A	KCX203
A	GLU206
A	HIS295
A	ARG296
A	HIS328
A	LYS335

site_id	AC2
Number of Residues	5
Details	binding site for residue MG A 1002

Chain	Residue
A	LYS179
A	KCX203
A	ASP205
A	GLU206
A	CAP1001

site_id	AC3
Number of Residues	20
Details	binding site for residue CAP B 1001

Chain	Residue
B	THR175
B	LYS177
B	LYS179
B	KCX203
B	GLU206
B	HIS295
B	ARG296
B	HIS328
B	LYS335
B	LEU336
B	SER380
B	GLY381
B	GLY382
B	GLY404
B	GLY405
B	MG1002
F	GLU62
F	THR67
F	TRP68
F	ASN125

site_id	AC4
Number of Residues	5
Details	binding site for residue MG B 1002

Chain	Residue
B	LYS179
B	KCX203
B	ASP205
B	GLU206
B	CAP1001

site_id	AC5
Number of Residues	20
Details	binding site for residue CAP C 1001

Chain	Residue
C	THR175
C	LYS177
C	LYS179
C	KCX203
C	GLU206
C	HIS295
C	ARG296
C	HIS328
C	LYS335
C	LEU336
C	SER380
C	GLY381
C	GLY382
C	GLY404
C	GLY405
C	MG1002
G	GLU62
G	THR67
G	TRP68
G	ASN125

site_id	AC6
Number of Residues	5
Details	binding site for residue MG C 1002

Chain	Residue
C	LYS179
C	KCX203
C	ASP205
C	GLU206
C	CAP1001

site_id	AC7
Number of Residues	20
Details	binding site for residue CAP D 1001

Chain	Residue
D	THR175
D	LYS177
D	LYS179
D	KCX203
D	GLU206
D	HIS295
D	ARG296
D	HIS328
D	LYS335
D	LEU336
D	SER380
D	GLY381
D	GLY382
D	GLY404
D	GLY405
D	MG1002
H	GLU62
H	THR67
H	TRP68
H	ASN125

site_id	AC8
Number of Residues	5
Details	binding site for residue MG D 1002

Chain	Residue
D	CAP1001
D	LYS179
D	KCX203
D	ASP205
D	GLU206

site_id	AC9
Number of Residues	21
Details	binding site for residue CAP E 1001

Chain	Residue
A	GLU62
A	THR67
A	TRP68
A	ASN125
E	THR175
E	LYS177
E	LYS179
E	KCX203
E	GLU206
E	HIS295
E	ARG296
E	HIS299
E	HIS328
E	LYS335
E	LEU336
E	SER380
E	GLY381
E	GLY382
E	GLY404
E	GLY405
E	MG1002

site_id	AD1
Number of Residues	5
Details	binding site for residue MG E 1002

Chain	Residue
E	LYS179
E	KCX203
E	ASP205
E	GLU206
E	CAP1001

site_id	AD2
Number of Residues	20
Details	binding site for residue CAP F 1001

Chain	Residue
B	GLU62
B	THR67
B	TRP68
B	ASN125
F	THR175
F	LYS177
F	LYS179
F	KCX203
F	GLU206
F	HIS295
F	ARG296
F	HIS328
F	LYS335
F	LEU336
F	SER380
F	GLY381
F	GLY382
F	GLY404
F	GLY405
F	MG1002

site_id	AD3
Number of Residues	5
Details	binding site for residue MG F 1002

Chain	Residue
F	LYS179
F	KCX203
F	ASP205
F	GLU206
F	CAP1001

site_id	AD4
Number of Residues	20
Details	binding site for residue CAP G 1001

Chain	Residue
C	GLU62
C	THR67
C	TRP68
C	ASN125
G	THR175
G	LYS177
G	LYS179
G	KCX203
G	GLU206
G	HIS295
G	ARG296
G	HIS328
G	LYS335
G	LEU336
G	SER380
G	GLY381
G	GLY382
G	GLY404
G	GLY405
G	MG1002

site_id	AD5
Number of Residues	5
Details	binding site for residue MG G 1002

Chain	Residue
G	LYS179
G	KCX203
G	ASP205
G	GLU206
G	CAP1001

site_id	AD6
Number of Residues	20
Details	binding site for residue CAP H 1001

Chain	Residue
D	GLU62
D	THR67
D	TRP68
D	ASN125
H	THR175
H	LYS177
H	LYS179
H	KCX203
H	GLU206
H	HIS295
H	ARG296
H	HIS328
H	LYS335
H	LEU336
H	SER380
H	GLY381
H	GLY382
H	GLY404
H	GLY405
H	MG1002

site_id	AD7
Number of Residues	5
Details	binding site for residue MG H 1002

Chain	Residue
H	LYS179
H	KCX203
H	ASP205
H	GLU206
H	CAP1001

Functional Information from PROSITE/UniProt

site_id	PS00157
Number of Residues	9
Details	RUBISCO_LARGE Ribulose bisphosphate carboxylase large chain active site. GlDFmKdDE

Chain	Residue	Details
A	GLY198-GLU206

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	16
Details	Active site: {"description":"Proton acceptor","evidences":[{"source":"HAMAP-Rule","id":"MF_01338","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	8
Details	Binding site: {"description":"in homodimeric partner","evidences":[{"source":"HAMAP-Rule","id":"MF_01338","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	56
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01338","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	8
Details	Binding site: {"description":"via carbamate group","evidences":[{"source":"HAMAP-Rule","id":"MF_01338","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI5
Number of Residues	8
Details	Site: {"description":"Transition state stabilizer","evidences":[{"source":"HAMAP-Rule","id":"MF_01338","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI6
Number of Residues	8
Details	Modified residue: {"description":"N6-carboxylysine","evidences":[{"source":"HAMAP-Rule","id":"MF_01338","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)