5NV3
Structure of Rubisco from Rhodobacter sphaeroides in complex with CABP
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000287 | molecular_function | magnesium ion binding |
A | 0004497 | molecular_function | monooxygenase activity |
A | 0015977 | biological_process | carbon fixation |
A | 0015979 | biological_process | photosynthesis |
A | 0016829 | molecular_function | lyase activity |
A | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
A | 0019253 | biological_process | reductive pentose-phosphate cycle |
A | 0046872 | molecular_function | metal ion binding |
B | 0000287 | molecular_function | magnesium ion binding |
B | 0004497 | molecular_function | monooxygenase activity |
B | 0015977 | biological_process | carbon fixation |
B | 0015979 | biological_process | photosynthesis |
B | 0016829 | molecular_function | lyase activity |
B | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
B | 0019253 | biological_process | reductive pentose-phosphate cycle |
B | 0046872 | molecular_function | metal ion binding |
C | 0000287 | molecular_function | magnesium ion binding |
C | 0004497 | molecular_function | monooxygenase activity |
C | 0015977 | biological_process | carbon fixation |
C | 0015979 | biological_process | photosynthesis |
C | 0016829 | molecular_function | lyase activity |
C | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
C | 0019253 | biological_process | reductive pentose-phosphate cycle |
C | 0046872 | molecular_function | metal ion binding |
D | 0000287 | molecular_function | magnesium ion binding |
D | 0004497 | molecular_function | monooxygenase activity |
D | 0015977 | biological_process | carbon fixation |
D | 0015979 | biological_process | photosynthesis |
D | 0016829 | molecular_function | lyase activity |
D | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
D | 0019253 | biological_process | reductive pentose-phosphate cycle |
D | 0046872 | molecular_function | metal ion binding |
E | 0000287 | molecular_function | magnesium ion binding |
E | 0004497 | molecular_function | monooxygenase activity |
E | 0015977 | biological_process | carbon fixation |
E | 0015979 | biological_process | photosynthesis |
E | 0016829 | molecular_function | lyase activity |
E | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
E | 0019253 | biological_process | reductive pentose-phosphate cycle |
E | 0046872 | molecular_function | metal ion binding |
F | 0000287 | molecular_function | magnesium ion binding |
F | 0004497 | molecular_function | monooxygenase activity |
F | 0015977 | biological_process | carbon fixation |
F | 0015979 | biological_process | photosynthesis |
F | 0016829 | molecular_function | lyase activity |
F | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
F | 0019253 | biological_process | reductive pentose-phosphate cycle |
F | 0046872 | molecular_function | metal ion binding |
G | 0000287 | molecular_function | magnesium ion binding |
G | 0004497 | molecular_function | monooxygenase activity |
G | 0015977 | biological_process | carbon fixation |
G | 0015979 | biological_process | photosynthesis |
G | 0016829 | molecular_function | lyase activity |
G | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
G | 0019253 | biological_process | reductive pentose-phosphate cycle |
G | 0046872 | molecular_function | metal ion binding |
H | 0000287 | molecular_function | magnesium ion binding |
H | 0004497 | molecular_function | monooxygenase activity |
H | 0015977 | biological_process | carbon fixation |
H | 0015979 | biological_process | photosynthesis |
H | 0016829 | molecular_function | lyase activity |
H | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
H | 0019253 | biological_process | reductive pentose-phosphate cycle |
H | 0046872 | molecular_function | metal ion binding |
I | 0015977 | biological_process | carbon fixation |
I | 0015979 | biological_process | photosynthesis |
I | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
I | 0019253 | biological_process | reductive pentose-phosphate cycle |
J | 0015977 | biological_process | carbon fixation |
J | 0015979 | biological_process | photosynthesis |
J | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
J | 0019253 | biological_process | reductive pentose-phosphate cycle |
K | 0015977 | biological_process | carbon fixation |
K | 0015979 | biological_process | photosynthesis |
K | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
K | 0019253 | biological_process | reductive pentose-phosphate cycle |
L | 0015977 | biological_process | carbon fixation |
L | 0015979 | biological_process | photosynthesis |
L | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
L | 0019253 | biological_process | reductive pentose-phosphate cycle |
M | 0015977 | biological_process | carbon fixation |
M | 0015979 | biological_process | photosynthesis |
M | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
M | 0019253 | biological_process | reductive pentose-phosphate cycle |
N | 0015977 | biological_process | carbon fixation |
N | 0015979 | biological_process | photosynthesis |
N | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
N | 0019253 | biological_process | reductive pentose-phosphate cycle |
O | 0015977 | biological_process | carbon fixation |
O | 0015979 | biological_process | photosynthesis |
O | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
O | 0019253 | biological_process | reductive pentose-phosphate cycle |
P | 0015977 | biological_process | carbon fixation |
P | 0015979 | biological_process | photosynthesis |
P | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
P | 0019253 | biological_process | reductive pentose-phosphate cycle |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 20 |
Details | binding site for residue CAP A 1001 |
Chain | Residue |
A | THR175 |
A | LEU336 |
A | SER380 |
A | GLY381 |
A | GLY382 |
A | GLY404 |
A | GLY405 |
A | MG1002 |
E | GLU62 |
E | THR67 |
E | TRP68 |
A | LYS177 |
E | ASN125 |
A | LYS179 |
A | KCX203 |
A | GLU206 |
A | HIS295 |
A | ARG296 |
A | HIS328 |
A | LYS335 |
site_id | AC2 |
Number of Residues | 5 |
Details | binding site for residue MG A 1002 |
Chain | Residue |
A | LYS179 |
A | KCX203 |
A | ASP205 |
A | GLU206 |
A | CAP1001 |
site_id | AC3 |
Number of Residues | 20 |
Details | binding site for residue CAP B 1001 |
Chain | Residue |
B | THR175 |
B | LYS177 |
B | LYS179 |
B | KCX203 |
B | GLU206 |
B | HIS295 |
B | ARG296 |
B | HIS328 |
B | LYS335 |
B | LEU336 |
B | SER380 |
B | GLY381 |
B | GLY382 |
B | GLY404 |
B | GLY405 |
B | MG1002 |
F | GLU62 |
F | THR67 |
F | TRP68 |
F | ASN125 |
site_id | AC4 |
Number of Residues | 5 |
Details | binding site for residue MG B 1002 |
Chain | Residue |
B | LYS179 |
B | KCX203 |
B | ASP205 |
B | GLU206 |
B | CAP1001 |
site_id | AC5 |
Number of Residues | 20 |
Details | binding site for residue CAP C 1001 |
Chain | Residue |
C | THR175 |
C | LYS177 |
C | LYS179 |
C | KCX203 |
C | GLU206 |
C | HIS295 |
C | ARG296 |
C | HIS328 |
C | LYS335 |
C | LEU336 |
C | SER380 |
C | GLY381 |
C | GLY382 |
C | GLY404 |
C | GLY405 |
C | MG1002 |
G | GLU62 |
G | THR67 |
G | TRP68 |
G | ASN125 |
site_id | AC6 |
Number of Residues | 5 |
Details | binding site for residue MG C 1002 |
Chain | Residue |
C | LYS179 |
C | KCX203 |
C | ASP205 |
C | GLU206 |
C | CAP1001 |
site_id | AC7 |
Number of Residues | 20 |
Details | binding site for residue CAP D 1001 |
Chain | Residue |
D | THR175 |
D | LYS177 |
D | LYS179 |
D | KCX203 |
D | GLU206 |
D | HIS295 |
D | ARG296 |
D | HIS328 |
D | LYS335 |
D | LEU336 |
D | SER380 |
D | GLY381 |
D | GLY382 |
D | GLY404 |
D | GLY405 |
D | MG1002 |
H | GLU62 |
H | THR67 |
H | TRP68 |
H | ASN125 |
site_id | AC8 |
Number of Residues | 5 |
Details | binding site for residue MG D 1002 |
Chain | Residue |
D | CAP1001 |
D | LYS179 |
D | KCX203 |
D | ASP205 |
D | GLU206 |
site_id | AC9 |
Number of Residues | 21 |
Details | binding site for residue CAP E 1001 |
Chain | Residue |
A | GLU62 |
A | THR67 |
A | TRP68 |
A | ASN125 |
E | THR175 |
E | LYS177 |
E | LYS179 |
E | KCX203 |
E | GLU206 |
E | HIS295 |
E | ARG296 |
E | HIS299 |
E | HIS328 |
E | LYS335 |
E | LEU336 |
E | SER380 |
E | GLY381 |
E | GLY382 |
E | GLY404 |
E | GLY405 |
E | MG1002 |
site_id | AD1 |
Number of Residues | 5 |
Details | binding site for residue MG E 1002 |
Chain | Residue |
E | LYS179 |
E | KCX203 |
E | ASP205 |
E | GLU206 |
E | CAP1001 |
site_id | AD2 |
Number of Residues | 20 |
Details | binding site for residue CAP F 1001 |
Chain | Residue |
B | GLU62 |
B | THR67 |
B | TRP68 |
B | ASN125 |
F | THR175 |
F | LYS177 |
F | LYS179 |
F | KCX203 |
F | GLU206 |
F | HIS295 |
F | ARG296 |
F | HIS328 |
F | LYS335 |
F | LEU336 |
F | SER380 |
F | GLY381 |
F | GLY382 |
F | GLY404 |
F | GLY405 |
F | MG1002 |
site_id | AD3 |
Number of Residues | 5 |
Details | binding site for residue MG F 1002 |
Chain | Residue |
F | LYS179 |
F | KCX203 |
F | ASP205 |
F | GLU206 |
F | CAP1001 |
site_id | AD4 |
Number of Residues | 20 |
Details | binding site for residue CAP G 1001 |
Chain | Residue |
C | GLU62 |
C | THR67 |
C | TRP68 |
C | ASN125 |
G | THR175 |
G | LYS177 |
G | LYS179 |
G | KCX203 |
G | GLU206 |
G | HIS295 |
G | ARG296 |
G | HIS328 |
G | LYS335 |
G | LEU336 |
G | SER380 |
G | GLY381 |
G | GLY382 |
G | GLY404 |
G | GLY405 |
G | MG1002 |
site_id | AD5 |
Number of Residues | 5 |
Details | binding site for residue MG G 1002 |
Chain | Residue |
G | LYS179 |
G | KCX203 |
G | ASP205 |
G | GLU206 |
G | CAP1001 |
site_id | AD6 |
Number of Residues | 20 |
Details | binding site for residue CAP H 1001 |
Chain | Residue |
D | GLU62 |
D | THR67 |
D | TRP68 |
D | ASN125 |
H | THR175 |
H | LYS177 |
H | LYS179 |
H | KCX203 |
H | GLU206 |
H | HIS295 |
H | ARG296 |
H | HIS328 |
H | LYS335 |
H | LEU336 |
H | SER380 |
H | GLY381 |
H | GLY382 |
H | GLY404 |
H | GLY405 |
H | MG1002 |
site_id | AD7 |
Number of Residues | 5 |
Details | binding site for residue MG H 1002 |
Chain | Residue |
H | LYS179 |
H | KCX203 |
H | ASP205 |
H | GLU206 |
H | CAP1001 |
Functional Information from PROSITE/UniProt
site_id | PS00157 |
Number of Residues | 9 |
Details | RUBISCO_LARGE Ribulose bisphosphate carboxylase large chain active site. GlDFmKdDE |
Chain | Residue | Details |
A | GLY198-GLU206 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 16 |
Details | ACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_01338 |
Chain | Residue | Details |
A | LYS177 | |
E | HIS295 | |
F | LYS177 | |
F | HIS295 | |
G | LYS177 | |
G | HIS295 | |
H | LYS177 | |
H | HIS295 | |
A | HIS295 | |
B | LYS177 | |
B | HIS295 | |
C | LYS177 | |
C | HIS295 | |
D | LYS177 | |
D | HIS295 | |
E | LYS177 |
site_id | SWS_FT_FI2 |
Number of Residues | 8 |
Details | BINDING: in homodimeric partner => ECO:0000255|HAMAP-Rule:MF_01338 |
Chain | Residue | Details |
A | ASN125 | |
B | ASN125 | |
C | ASN125 | |
D | ASN125 | |
E | ASN125 | |
F | ASN125 | |
G | ASN125 | |
H | ASN125 |
site_id | SWS_FT_FI3 |
Number of Residues | 56 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01338 |
Chain | Residue | Details |
A | THR175 | |
B | ASP205 | |
B | GLU206 | |
B | ARG296 | |
B | HIS328 | |
B | SER380 | |
C | THR175 | |
C | LYS179 | |
C | ASP205 | |
C | GLU206 | |
C | ARG296 | |
A | LYS179 | |
C | HIS328 | |
C | SER380 | |
D | THR175 | |
D | LYS179 | |
D | ASP205 | |
D | GLU206 | |
D | ARG296 | |
D | HIS328 | |
D | SER380 | |
E | THR175 | |
A | ASP205 | |
E | LYS179 | |
E | ASP205 | |
E | GLU206 | |
E | ARG296 | |
E | HIS328 | |
E | SER380 | |
F | THR175 | |
F | LYS179 | |
F | ASP205 | |
F | GLU206 | |
A | GLU206 | |
F | ARG296 | |
F | HIS328 | |
F | SER380 | |
G | THR175 | |
G | LYS179 | |
G | ASP205 | |
G | GLU206 | |
G | ARG296 | |
G | HIS328 | |
G | SER380 | |
A | ARG296 | |
H | THR175 | |
H | LYS179 | |
H | ASP205 | |
H | GLU206 | |
H | ARG296 | |
H | HIS328 | |
H | SER380 | |
A | HIS328 | |
A | SER380 | |
B | THR175 | |
B | LYS179 |
site_id | SWS_FT_FI4 |
Number of Residues | 8 |
Details | BINDING: via carbamate group => ECO:0000255|HAMAP-Rule:MF_01338 |
Chain | Residue | Details |
A | KCX203 | |
B | KCX203 | |
C | KCX203 | |
D | KCX203 | |
E | KCX203 | |
F | KCX203 | |
G | KCX203 | |
H | KCX203 |
site_id | SWS_FT_FI5 |
Number of Residues | 8 |
Details | SITE: Transition state stabilizer => ECO:0000255|HAMAP-Rule:MF_01338 |
Chain | Residue | Details |
A | LYS335 | |
B | LYS335 | |
C | LYS335 | |
D | LYS335 | |
E | LYS335 | |
F | LYS335 | |
G | LYS335 | |
H | LYS335 |
site_id | SWS_FT_FI6 |
Number of Residues | 8 |
Details | MOD_RES: N6-carboxylysine => ECO:0000255|HAMAP-Rule:MF_01338 |
Chain | Residue | Details |
A | KCX203 | |
B | KCX203 | |
C | KCX203 | |
D | KCX203 | |
E | KCX203 | |
F | KCX203 | |
G | KCX203 | |
H | KCX203 |