Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5NRH

Crystal structure of Burkholderia pseudomallei D-alanine-D-alanine ligase in complex with AMP

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0008360biological_processregulation of cell shape
A0008716molecular_functionD-alanine-D-alanine ligase activity
A0009252biological_processpeptidoglycan biosynthetic process
A0016874molecular_functionligase activity
A0046872molecular_functionmetal ion binding
A0071555biological_processcell wall organization
B0000166molecular_functionnucleotide binding
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0008360biological_processregulation of cell shape
B0008716molecular_functionD-alanine-D-alanine ligase activity
B0009252biological_processpeptidoglycan biosynthetic process
B0016874molecular_functionligase activity
B0046872molecular_functionmetal ion binding
B0071555biological_processcell wall organization
Functional Information from PDB Data
site_idAC1
Number of Residues15
Detailsbinding site for residue AMP A 700
ChainResidue
ALYS104
ATYR215
AGLU275
AHOH804
AHOH842
AHOH920
AHOH951
APHE146
ALYS148
AGLU184
ALYS185
ASER186
AILE187
AGLU192
APHE214

site_idAC2
Number of Residues6
Detailsbinding site for residue MG A 701
ChainResidue
AHIS70
AHOH809
AHOH947
AHOH1070
AHOH1094
AHOH1170

site_idAC3
Number of Residues7
Detailsbinding site for residue SO4 A 702
ChainResidue
AARG293
AGLY298
ATYR299
AHOH818
AHOH819
AHOH1003
BARG293

site_idAC4
Number of Residues4
Detailsbinding site for residue EDO A 703
ChainResidue
AGLU24
AARG31
AHOH826
AHOH949

site_idAC5
Number of Residues4
Detailsbinding site for residue EDO A 704
ChainResidue
ALEU201
AASP202
AVAL295
AHOH856

site_idAC6
Number of Residues8
Detailsbinding site for residue EDO A 705
ChainResidue
AALA219
ALYS220
AALA223
AASN224
AASP225
ATHR226
ATYR228
AHOH973

site_idAC7
Number of Residues16
Detailsbinding site for residue AMP B 700
ChainResidue
BLYS104
BPHE146
BLYS148
BSER155
BGLU184
BLYS185
BSER186
BILE187
BGLU192
BPHE214
BTYR215
BLEU274
BGLU275
BHOH852
BHOH912
BHOH949

site_idAC8
Number of Residues8
Detailsbinding site for residue SO4 B 701
ChainResidue
BHIS70
BTYR221
BARG260
BASN277
BPRO280
BGLY281
BHOH827
BHOH950

Functional Information from PROSITE/UniProt
site_idPS00843
Number of Residues12
DetailsDALA_DALA_LIGASE_1 D-alanine--D-alanine ligase signature 1. HGgyGENGqIQG
ChainResidueDetails
AHIS70-GLY81

site_idPS00844
Number of Residues29
DetailsDALA_DALA_LIGASE_2 D-alanine--D-alanine ligase signature 2. LgctDwGRADFMldaagnpy....FlEVNTaPG
ChainResidueDetails
ALEU253-GLY281

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues400
DetailsDomain: {"description":"ATP-grasp","evidences":[{"source":"HAMAP-Rule","id":"MF_00047","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues116
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00047","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

238895

PDB entries from 2025-07-16

PDB statisticsPDBj update infoContact PDBjnumon