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5NP9

Crystal structure of Bacillus subtilis YdiB in complex with ADP

Functional Information from GO Data
ChainGOidnamespacecontents
A0002949biological_processtRNA threonylcarbamoyladenosine modification
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0008033biological_processtRNA processing
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues20
Detailsbinding site for residue ADP A 201
ChainResidue
ATHR8
ALYS41
ATHR42
ATHR43
AGLU106
AASP130
AARG132
AMG202
AHOH306
AHOH316
AHOH335
AASN10
AHOH342
APRO11
ATHR14
AASP36
ALEU37
AGLY38
AALA39
AGLY40

site_idAC2
Number of Residues6
Detailsbinding site for residue MG A 202
ChainResidue
ATHR42
AGLU106
AADP201
AHOH306
AHOH311
AHOH316

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
ATHR42
AGLU106
AASP130
AGLY38

221051

PDB entries from 2024-06-12

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