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5NO2

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate)

Functional Information from GO Data
ChainGOidnamespacecontents
D0000028biological_processribosomal small subunit assembly
D0000900molecular_functionmRNA regulatory element binding translation repressor activity
D0002181biological_processcytoplasmic translation
D0003723molecular_functionRNA binding
D0003735molecular_functionstructural constituent of ribosome
D0005515molecular_functionprotein binding
D0005737cellular_componentcytoplasm
D0005829cellular_componentcytosol
D0005840cellular_componentribosome
D0006353biological_processDNA-templated transcription termination
D0006412biological_processtranslation
D0006417biological_processregulation of translation
D0015935cellular_componentsmall ribosomal subunit
D0019843molecular_functionrRNA binding
D0022627cellular_componentcytosolic small ribosomal subunit
D0031564biological_processtranscription antitermination
D0042254biological_processribosome biogenesis
D0042274biological_processribosomal small subunit biogenesis
D0045947biological_processnegative regulation of translational initiation
D0046677biological_processresponse to antibiotic
D0048027molecular_functionmRNA 5'-UTR binding
D1990145biological_processmaintenance of translational fidelity
D1990904cellular_componentribonucleoprotein complex
E0000028biological_processribosomal small subunit assembly
E0002181biological_processcytoplasmic translation
E0003723molecular_functionRNA binding
E0003735molecular_functionstructural constituent of ribosome
E0005515molecular_functionprotein binding
E0005737cellular_componentcytoplasm
E0005829cellular_componentcytosol
E0005840cellular_componentribosome
E0006412biological_processtranslation
E0015935cellular_componentsmall ribosomal subunit
E0019843molecular_functionrRNA binding
E0022627cellular_componentcytosolic small ribosomal subunit
E0043229cellular_componentintracellular organelle
E0046677biological_processresponse to antibiotic
E1990145biological_processmaintenance of translational fidelity
E1990904cellular_componentribonucleoprotein complex
F0003735molecular_functionstructural constituent of ribosome
F0005840cellular_componentribosome
F0006412biological_processtranslation
F0019843molecular_functionrRNA binding
G0003723molecular_functionRNA binding
G0003735molecular_functionstructural constituent of ribosome
G0006412biological_processtranslation
G0015935cellular_componentsmall ribosomal subunit
H0000028biological_processribosomal small subunit assembly
H0002181biological_processcytoplasmic translation
H0003723molecular_functionRNA binding
H0003735molecular_functionstructural constituent of ribosome
H0005737cellular_componentcytoplasm
H0005829cellular_componentcytosol
H0005840cellular_componentribosome
H0006412biological_processtranslation
H0006417biological_processregulation of translation
H0019843molecular_functionrRNA binding
H0022627cellular_componentcytosolic small ribosomal subunit
H0043229cellular_componentintracellular organelle
H0043488biological_processregulation of mRNA stability
H1990904cellular_componentribonucleoprotein complex
I0000049molecular_functiontRNA binding
I0002181biological_processcytoplasmic translation
I0003723molecular_functionRNA binding
I0003735molecular_functionstructural constituent of ribosome
I0005737cellular_componentcytoplasm
I0005829cellular_componentcytosol
I0005840cellular_componentribosome
I0006412biological_processtranslation
I0022627cellular_componentcytosolic small ribosomal subunit
I0043229cellular_componentintracellular organelle
I1990904cellular_componentribonucleoprotein complex
J0000049molecular_functiontRNA binding
J0001072molecular_functiontranscription antitermination factor activity, RNA binding
J0002181biological_processcytoplasmic translation
J0003723molecular_functionRNA binding
J0003735molecular_functionstructural constituent of ribosome
J0005515molecular_functionprotein binding
J0005737cellular_componentcytoplasm
J0005829cellular_componentcytosol
J0005840cellular_componentribosome
J0006412biological_processtranslation
J0008023cellular_componenttranscription elongation factor complex
J0015935cellular_componentsmall ribosomal subunit
J0022627cellular_componentcytosolic small ribosomal subunit
J0031564biological_processtranscription antitermination
J0032784biological_processregulation of DNA-templated transcription elongation
J0042254biological_processribosome biogenesis
J1990904cellular_componentribonucleoprotein complex
K0002181biological_processcytoplasmic translation
K0003723molecular_functionRNA binding
K0003735molecular_functionstructural constituent of ribosome
K0005515molecular_functionprotein binding
K0005737cellular_componentcytoplasm
K0005829cellular_componentcytosol
K0005840cellular_componentribosome
K0006412biological_processtranslation
K0019843molecular_functionrRNA binding
K0022627cellular_componentcytosolic small ribosomal subunit
K0070181molecular_functionsmall ribosomal subunit rRNA binding
K1990904cellular_componentribonucleoprotein complex
M0000049molecular_functiontRNA binding
M0002181biological_processcytoplasmic translation
M0003676molecular_functionnucleic acid binding
M0003723molecular_functionRNA binding
M0003735molecular_functionstructural constituent of ribosome
M0005515molecular_functionprotein binding
M0005737cellular_componentcytoplasm
M0005829cellular_componentcytosol
M0005840cellular_componentribosome
M0006412biological_processtranslation
M0015935cellular_componentsmall ribosomal subunit
M0019843molecular_functionrRNA binding
M0022627cellular_componentcytosolic small ribosomal subunit
M1990904cellular_componentribonucleoprotein complex
N0000028biological_processribosomal small subunit assembly
N0000049molecular_functiontRNA binding
N0002181biological_processcytoplasmic translation
N0003735molecular_functionstructural constituent of ribosome
N0005737cellular_componentcytoplasm
N0005840cellular_componentribosome
N0006412biological_processtranslation
N0015935cellular_componentsmall ribosomal subunit
N0019843molecular_functionrRNA binding
N0022627cellular_componentcytosolic small ribosomal subunit
N0043229cellular_componentintracellular organelle
N1990904cellular_componentribonucleoprotein complex
O0000028biological_processribosomal small subunit assembly
O0002181biological_processcytoplasmic translation
O0003723molecular_functionRNA binding
O0003735molecular_functionstructural constituent of ribosome
O0005737cellular_componentcytoplasm
O0005829cellular_componentcytosol
O0005840cellular_componentribosome
O0006412biological_processtranslation
O0006417biological_processregulation of translation
O0019843molecular_functionrRNA binding
O0022627cellular_componentcytosolic small ribosomal subunit
O0035194biological_processregulatory ncRNA-mediated post-transcriptional gene silencing
O0043229cellular_componentintracellular organelle
O0070181molecular_functionsmall ribosomal subunit rRNA binding
O1903231molecular_functionmRNA base-pairing translational repressor activity
O1990904cellular_componentribonucleoprotein complex
P0000028biological_processribosomal small subunit assembly
P0000400molecular_functionfour-way junction DNA binding
P0002181biological_processcytoplasmic translation
P0003735molecular_functionstructural constituent of ribosome
P0004518molecular_functionnuclease activity
P0004519molecular_functionendonuclease activity
P0004520molecular_functionDNA endonuclease activity
P0005737cellular_componentcytoplasm
P0005840cellular_componentribosome
P0006259biological_processDNA metabolic process
P0006412biological_processtranslation
P0015935cellular_componentsmall ribosomal subunit
P0016787molecular_functionhydrolase activity
P0022627cellular_componentcytosolic small ribosomal subunit
P0043229cellular_componentintracellular organelle
P1990904cellular_componentribonucleoprotein complex
Q0000028biological_processribosomal small subunit assembly
Q0002181biological_processcytoplasmic translation
Q0003723molecular_functionRNA binding
Q0003735molecular_functionstructural constituent of ribosome
Q0005737cellular_componentcytoplasm
Q0005840cellular_componentribosome
Q0006412biological_processtranslation
Q0008270molecular_functionzinc ion binding
Q0019843molecular_functionrRNA binding
Q0022627cellular_componentcytosolic small ribosomal subunit
Q0046677biological_processresponse to antibiotic
Q0060090molecular_functionmolecular adaptor activity
Q0070181molecular_functionsmall ribosomal subunit rRNA binding
Q1990904cellular_componentribonucleoprotein complex
R0003735molecular_functionstructural constituent of ribosome
R0005840cellular_componentribosome
R0006412biological_processtranslation
S0003723molecular_functionRNA binding
S0003735molecular_functionstructural constituent of ribosome
S0005840cellular_componentribosome
S0006412biological_processtranslation
S0015935cellular_componentsmall ribosomal subunit
T0000028biological_processribosomal small subunit assembly
T0002181biological_processcytoplasmic translation
T0003723molecular_functionRNA binding
T0003735molecular_functionstructural constituent of ribosome
T0005737cellular_componentcytoplasm
T0005829cellular_componentcytosol
T0005840cellular_componentribosome
T0006412biological_processtranslation
T0008073molecular_functionornithine decarboxylase inhibitor activity
T0015935cellular_componentsmall ribosomal subunit
T0019843molecular_functionrRNA binding
T0022627cellular_componentcytosolic small ribosomal subunit
T0070181molecular_functionsmall ribosomal subunit rRNA binding
T1990904cellular_componentribonucleoprotein complex
Z0003924molecular_functionGTPase activity
Z0005525molecular_functionGTP binding
Functional Information from PDB Data
site_idAC1
Number of Residues2
Detailsbinding site for residue MG A 1603
ChainResidue
AA676
AU677

site_idAC2
Number of Residues2
Detailsbinding site for residue MG A 1605
ChainResidue
AC620
AA621

site_idAC3
Number of Residues2
Detailsbinding site for residue MG A 1607
ChainResidue
AA174
AC175

site_idAC4
Number of Residues3
Detailsbinding site for residue MG A 1608
ChainResidue
AG145
AG177
AA197

site_idAC5
Number of Residues2
Detailsbinding site for residue MG A 1609
ChainResidue
AC440
AA441

site_idAC6
Number of Residues2
Detailsbinding site for residue MG A 1610
ChainResidue
AG113
AC308

site_idAC7
Number of Residues2
Detailsbinding site for residue MG A 1611
ChainResidue
AG859
AA860

site_idAC8
Number of Residues1
Detailsbinding site for residue MG A 1612
ChainResidue
AA554

site_idAC9
Number of Residues2
Detailsbinding site for residue MG A 1613
ChainResidue
AU751
AG752

site_idAD1
Number of Residues3
Detailsbinding site for residue MG A 1614
ChainResidue
AC314
AC328
AA329

site_idAD2
Number of Residues1
Detailsbinding site for residue MG A 1615
ChainResidue
AC311

site_idAD3
Number of Residues1
Detailsbinding site for residue MG A 1616
ChainResidue
AU114

site_idAD4
Number of Residues2
Detailsbinding site for residue MG A 1617
ChainResidue
AC355
AA356

site_idAD5
Number of Residues1
Detailsbinding site for residue MG A 1619
ChainResidue
AG888

site_idAD6
Number of Residues1
Detailsbinding site for residue MG A 1620
ChainResidue
AA819

site_idAD7
Number of Residues1
Detailsbinding site for residue MG A 1621
ChainResidue
AA1394

site_idAD8
Number of Residues2
Detailsbinding site for residue MG A 1622
ChainResidue
AC770
AG771

site_idAD9
Number of Residues1
Detailsbinding site for residue MG A 1623
ChainResidue
AA609

site_idAE1
Number of Residues1
Detailsbinding site for residue MG A 1624
ChainResidue
AU610

site_idAE2
Number of Residues1
Detailsbinding site for residue MG A 1626
ChainResidue
AG21

site_idAE3
Number of Residues2
Detailsbinding site for residue MG A 1627
ChainResidue
AG100
AA101

site_idAE4
Number of Residues3
Detailsbinding site for residue MG A 1628
ChainResidue
AA116
AG117
AG289

site_idAE5
Number of Residues4
Detailsbinding site for residue MG A 1629
ChainResidue
AU180
AA181
AC194
AA195

site_idAE6
Number of Residues1
Detailsbinding site for residue MG A 1630
ChainResidue
AG266

site_idAE7
Number of Residues1
Detailsbinding site for residue MG A 1631
ChainResidue
AA329

site_idAE8
Number of Residues1
Detailsbinding site for residue MG A 1632
ChainResidue
AG324

site_idAE9
Number of Residues2
Detailsbinding site for residue MG A 1633
ChainResidue
AG331
AC352

site_idAF1
Number of Residues2
Detailsbinding site for residue MG A 1634
ChainResidue
AG361
AG362

site_idAF2
Number of Residues2
Detailsbinding site for residue MG A 1635
ChainResidue
AG417
AC418

site_idAF3
Number of Residues2
Detailsbinding site for residue MG A 1636
ChainResidue
AA509
AA510

site_idAF4
Number of Residues4
Detailsbinding site for residue MG A 1637
ChainResidue
APSU516
AG517
AA532
AA533

site_idAF5
Number of Residues1
Detailsbinding site for residue MG A 1638
ChainResidue
AG537

site_idAF6
Number of Residues2
Detailsbinding site for residue MG A 1639
ChainResidue
AA547
AG548

site_idAF7
Number of Residues3
Detailsbinding site for residue MG A 1640
ChainResidue
AA559
AA560
AU562

site_idAF8
Number of Residues3
Detailsbinding site for residue MG A 1641
ChainResidue
AA572
AA573
AA574

site_idAF9
Number of Residues3
Detailsbinding site for residue MG A 1642
ChainResidue
AG577
AC578
AC817

site_idAG1
Number of Residues2
Detailsbinding site for residue MG A 1644
ChainResidue
AA608
AA609

site_idAG2
Number of Residues1
Detailsbinding site for residue MG A 1646
ChainResidue
AC795

site_idAG3
Number of Residues2
Detailsbinding site for residue MG A 1647
ChainResidue
AA814
AA815

site_idAG4
Number of Residues2
Detailsbinding site for residue MG A 1648
ChainResidue
AG858
AG869

site_idAG5
Number of Residues1
Detailsbinding site for residue MG A 1649
ChainResidue
AU891

site_idAG6
Number of Residues1
Detailsbinding site for residue MG A 1650
ChainResidue
AG1079

site_idAG7
Number of Residues2
Detailsbinding site for residue MG A 1651
ChainResidue
AG1416
AG1417

site_idAG8
Number of Residues3
Detailsbinding site for residue MG A 1652
ChainResidue
AUR31498
AA1499
AA1500

site_idAG9
Number of Residues4
Detailsbinding site for residue MG A 1653
ChainResidue
AA1500
AG1505
AA1507
AA1508

site_idAH1
Number of Residues2
Detailsbinding site for residue MG A 1654
ChainResidue
AG1526
AU1527

site_idAH2
Number of Residues2
Detailsbinding site for residue MG A 1655
ChainResidue
AG944
AG945

site_idAH3
Number of Residues1
Detailsbinding site for residue MG A 1656
ChainResidue
AG1154

site_idAH4
Number of Residues2
Detailsbinding site for residue MG A 1657
ChainResidue
AC934
AU1345

site_idAH5
Number of Residues3
Detailsbinding site for residue MG A 1658
ChainResidue
AA937
AA938
AG939

site_idAH6
Number of Residues1
Detailsbinding site for residue MG A 1659
ChainResidue
AA1204

site_idAH7
Number of Residues2
Detailsbinding site for residue MG A 1660
ChainResidue
AG1198
AA1197

site_idAH8
Number of Residues3
Detailsbinding site for residue MG A 1662
ChainResidue
AU1095
AC1096
AG1108

site_idAH9
Number of Residues2
Detailsbinding site for residue MG A 1663
ChainResidue
AA1110
AA1111

site_idAI1
Number of Residues4
Detailsbinding site for residue MG A 1664
ChainResidue
AC980
AU981
AU982
AG1222

site_idAI2
Number of Residues2
Detailsbinding site for residue MG A 1665
ChainResidue
AC1303
AG1304

site_idAI3
Number of Residues4
Detailsbinding site for residue MG A 1667
ChainResidue
AU1330
MTHR20
MILE22
MVAL25

site_idAI4
Number of Residues1
Detailsbinding site for residue MG N 201
ChainResidue
NSER58

site_idAI5
Number of Residues1
Detailsbinding site for residue MG P 101
ChainResidue
PLYS12

site_idAI6
Number of Residues1
Detailsbinding site for residue MG T 101
ChainResidue
TASN78

site_idAI7
Number of Residues4
Detailsbinding site for residue ZN Z 401
ChainResidue
ZCYS297
ZCYS302
ZHIS304
ZCYS310

site_idAI8
Number of Residues20
Detailsbinding site for residue GNP Z 402
ChainResidue
ZASN160
ZLYS161
ZASP163
ZSER191
ZSER192
ZHIS193
ZSER216
ZGLY217
ZVAL218
ZGLY219
ZLYS220
ZSER221
ZSER222
ZASP238
ZSER240
ZGLN247
ZHIS248
ZTHR249
ZTHR250
ZMG403

site_idAI9
Number of Residues3
Detailsbinding site for residue MG Z 403
ChainResidue
ZSER221
ZTHR250
ZGNP402

Functional Information from PROSITE/UniProt
site_idPS00632
Number of Residues25
DetailsRIBOSOMAL_S4 Ribosomal protein S4 signature. LEgRLdnvVYRmgfGaTraeARqLV
ChainResidueDetails
DLEU94-VAL118

site_idPS00361
Number of Residues16
DetailsRIBOSOMAL_S10 Ribosomal protein S10 signature. AkrtGAqvrGPIpLPT
ChainResidueDetails
JALA29-THR44

site_idPS00732
Number of Residues10
DetailsRIBOSOMAL_S16 Ribosomal protein S16 signature. VtIRLARHGA
ChainResidueDetails
PVAL2-ALA11

site_idPS00362
Number of Residues31
DetailsRIBOSOMAL_S15 Ribosomal protein S15 signature. LqgHFaehKkDhhSrrgLlrMvsqrrkLldY
ChainResidueDetails
OLEU39-TYR69

site_idPS00053
Number of Residues18
DetailsRIBOSOMAL_S8 Ribosomal protein S8 signature. GiaVVSTSkGVMtdraAR
ChainResidueDetails
HGLY100-ARG117

site_idPS00527
Number of Residues23
DetailsRIBOSOMAL_S14 Ribosomal protein S14 signature. R.CrqtgrphgflrkFGLSRiKVR
ChainResidueDetails
NARG63-ARG85

site_idPS00061
Number of Residues29
DetailsADH_SHORT Short-chain dehydrogenases/reductases family signature. PdhkhavialTsiYGVGKTRSkAILaAAG
ChainResidueDetails
MPRO10-GLY38

site_idPS00646
Number of Residues14
DetailsRIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHrrGlpVRGQ
ChainResidueDetails
MARG87-GLN100

site_idPS01048
Number of Residues10
DetailsRIBOSOMAL_S6 Ribosomal protein S6 signature. GrRQLAYpIN
ChainResidueDetails
FGLY43-ASN52

site_idPS00056
Number of Residues13
DetailsRIBOSOMAL_S17 Ribosomal protein S17 signature. GDvVeIrEcRPLS
ChainResidueDetails
QGLY56-SER68

site_idPS00052
Number of Residues27
DetailsRIBOSOMAL_S7 Ribosomal protein S7 signature. SeLlakFVnilmvdGKKstaesIVysA
ChainResidueDetails
GSER20-ALA46

site_idPS00585
Number of Residues33
DetailsRIBOSOMAL_S5 Ribosomal protein S5 signature. GRifsFtAltVVGDgn.GrVGfGygkar.EVpa.AI
ChainResidueDetails
EGLY28-ILE60

site_idPS00054
Number of Residues23
DetailsRIBOSOMAL_S11 Ribosomal protein S11 signature. IrALnaA.GFrItnitDvTPiPHN
ChainResidueDetails
KILE97-ASN119

site_idPS00323
Number of Residues25
DetailsRIBOSOMAL_S19 Ribosomal protein S19 signature. NGRqhvpvfVtdemVGhkLGEFapT
ChainResidueDetails
SASN53-THR77

site_idPS00360
Number of Residues19
DetailsRIBOSOMAL_S9 Ribosomal protein S9 signature. GGGisGQagAirhGiTRAL
ChainResidueDetails
IGLY69-LEU87

site_idPS00057
Number of Residues24
DetailsRIBOSOMAL_S18 Ribosomal protein S18 signature. IDYkd.IatLknYITEs.GKIvpsRI
ChainResidueDetails
RILE21-ILE44

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01820
ChainResidueDetails
ZASN160
ZGLY214
ZCYS297
ZCYS302
ZHIS304
ZCYS310

218853

PDB entries from 2024-04-24

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