Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5NL4

Crystal structure of Zn1.3-E16V human ubiquitin (hUb) mutant adduct, from a solution 35 mM zinc acetate/1.3 mM E16V hUb

Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue ZN A 101
ChainResidue
AGLU18
AHOH204
AHOH248
CASP21
CHOH237

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN A 102
ChainResidue
AASP21
AACT103
AHOH208
BGLU18

site_idAC3
Number of Residues7
Detailsbinding site for residue ACT A 103
ChainResidue
AVAL16
AGLU18
AASP21
ALYS29
AZN102
AHOH208
BGLU18

site_idAC4
Number of Residues6
Detailsbinding site for residue PEG A 104
ChainResidue
AARG42
ALEU43
AGLN49
ALEU50
AHOH220
CGLN2

site_idAC5
Number of Residues10
Detailsbinding site for residue PEG A 105
ChainResidue
ALYS6
AGLY10
ATHR12
AHIS68
AHOH215
BILE44
BHIS68
BVAL70
BHOH230
BHOH249

site_idAC6
Number of Residues4
Detailsbinding site for residue ZN B 101
ChainResidue
AHIS68
BLYS6
BHIS68
BEDO105

site_idAC7
Number of Residues4
Detailsbinding site for residue ZN B 102
ChainResidue
BASP21
BACT103
BHOH238
CGLU18

site_idAC8
Number of Residues7
Detailsbinding site for residue ACT B 103
ChainResidue
BVAL16
BGLU18
BASP21
BLYS29
BZN102
BHOH238
CGLU18

site_idAC9
Number of Residues5
Detailsbinding site for residue EDO B 104
ChainResidue
BGLN31
BPRO38
BHOH206
BHOH208
BHOH217

site_idAD1
Number of Residues7
Detailsbinding site for residue EDO B 105
ChainResidue
ALYS6
ATHR66
AHIS68
BLYS6
BHIS68
BZN101
BHOH216

site_idAD2
Number of Residues8
Detailsbinding site for residue PEG B 106
ChainResidue
ALYS48
AHOH247
BGLN31
BASP32
BGLY35
BPRO37
BHOH204
BHOH244

site_idAD3
Number of Residues7
Detailsbinding site for residue ACT C 101
ChainResidue
BGLN2
CLYS27
CARG42
CGLN49
CLEU50
CHOH205
CHOH220

site_idAD4
Number of Residues7
Detailsbinding site for residue PEG C 102
ChainResidue
BLEU71
BARG72
CTHR7
CLEU8
CLYS11
CLEU69
CLEU71

Functional Information from PROSITE/UniProt
site_idPS00299
Number of Residues26
DetailsUBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD
ChainResidueDetails
ALYS27-ASP52

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsSITE: Interacts with activating enzyme
ChainResidueDetails
AARG54
AARG72
BARG54
BARG72
CARG54
CARG72

site_idSWS_FT_FI2
Number of Residues3
DetailsSITE: Essential for function
ChainResidueDetails
AHIS68
BHIS68
CHIS68

site_idSWS_FT_FI3
Number of Residues3
DetailsMOD_RES: Phosphoserine; by PINK1 => ECO:0000269|PubMed:24660806, ECO:0000269|PubMed:24751536, ECO:0000269|PubMed:24784582, ECO:0000269|PubMed:25527291
ChainResidueDetails
ASER65
BSER65
CSER65

site_idSWS_FT_FI4
Number of Residues3
DetailsMOD_RES: (Microbial infection) ADP-ribosylthreonine => ECO:0000269|PubMed:32330457
ChainResidueDetails
ATHR66
BTHR66
CTHR66

site_idSWS_FT_FI5
Number of Residues3
DetailsMOD_RES: ADP-ribosylglycine => ECO:0000269|PubMed:28525742
ChainResidueDetails
AGLY76
BGLY76
CGLY76

site_idSWS_FT_FI6
Number of Residues3
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603
ChainResidueDetails
ALYS6
BLYS6
CLYS6

site_idSWS_FT_FI7
Number of Residues6
DetailsCROSSLNK: Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)
ChainResidueDetails
AGLY76
BGLY76
CGLY76

site_idSWS_FT_FI8
Number of Residues6
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603, ECO:0000269|PubMed:16543144
ChainResidueDetails
ALYS11
ALYS48
BLYS11
BLYS48
CLYS11
CLYS48

site_idSWS_FT_FI9
Number of Residues3
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000305|PubMed:15466860
ChainResidueDetails
ALYS27
BLYS27
CLYS27

site_idSWS_FT_FI10
Number of Residues3
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16543144, ECO:0000269|PubMed:25752573, ECO:0000269|PubMed:25752577, ECO:0000269|PubMed:34239127
ChainResidueDetails
ALYS29
BLYS29
CLYS29

site_idSWS_FT_FI11
Number of Residues3
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:25752577
ChainResidueDetails
ALYS33
BLYS33
CLYS33

site_idSWS_FT_FI12
Number of Residues3
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16543144, ECO:0000269|PubMed:18719106
ChainResidueDetails
ALYS63
BLYS63
CLYS63

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon