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5NII

Crystal structure of the atypical thioredoxin reductase TRi from Desulfovibrio vulgaris Hildenborough

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004791molecular_functionthioredoxin-disulfide reductase (NADPH) activity
A0016491molecular_functionoxidoreductase activity
A0045454biological_processcell redox homeostasis
A0098869biological_processcellular oxidant detoxification
B0000166molecular_functionnucleotide binding
B0004791molecular_functionthioredoxin-disulfide reductase (NADPH) activity
B0016491molecular_functionoxidoreductase activity
B0045454biological_processcell redox homeostasis
B0098869biological_processcellular oxidant detoxification
Functional Information from PDB Data
site_idAC1
Number of Residues36
Detailsbinding site for residue FAD A 401
ChainResidue
AGLY10
AVAL38
ATYR42
AILE44
AASN46
AARG78
AILE79
AALA107
ATHR108
AGLY109
AALA230
AALA11
AGLY265
AASP266
ALEU272
AGLN273
AILE274
AHOH511
AHOH522
AHOH539
AHOH543
AHOH548
AGLY12
AHOH562
AHOH563
AHOH600
BTYR21
BALA39
BASP41
BARG57
APRO13
AALA14
AGLY33
ASER34
APRO36
ALYS37

site_idAC2
Number of Residues6
Detailsbinding site for residue NA A 402
ChainResidue
AGLY265
ATHR268
AGLY269
AGLY270
AGLU280
AHOH618

site_idAC3
Number of Residues6
Detailsbinding site for residue CL A 403
ChainResidue
AILE44
AASP45
AASN46
ATYR47
APHE50
BGLN66

site_idAC4
Number of Residues10
Detailsbinding site for residue GOL A 404
ChainResidue
AVAL113
AARG114
AGLN172
ALYS197
AMET227
BGLU68
BALA72
BVAL73
BLEU74
BHOH540

site_idAC5
Number of Residues5
Detailsbinding site for residue GOL A 405
ChainResidue
AGLU61
AARG64
AARG65
AGLU68
AHOH593

site_idAC6
Number of Residues5
Detailsbinding site for residue GOL A 406
ChainResidue
AASP51
AGLU52
AHOH578
AHOH592
BARG62

site_idAC7
Number of Residues4
Detailsbinding site for residue GOL A 407
ChainResidue
AGLU52
ATHR53
AARG62
AHOH592

site_idAC8
Number of Residues3
Detailsbinding site for residue GOL A 409
ChainResidue
ATYR130
ACYS131
AASP135

site_idAC9
Number of Residues1
Detailsbinding site for residue CL A 410
ChainResidue
AASP122

site_idAD1
Number of Residues33
Detailsbinding site for residue FAD B 401
ChainResidue
BHOH509
BHOH513
BHOH523
BHOH527
BHOH534
BHOH539
BHOH542
BHOH567
BHOH570
BHOH581
BGLY10
BALA11
BGLY12
BPRO13
BALA14
BGLY33
BSER34
BPRO36
BVAL38
BTYR42
BILE44
BASN46
BILE79
BALA107
BTHR108
BGLY109
BALA230
BGLY265
BASP266
BLEU272
BGLN273
BILE274
BALA277

site_idAD2
Number of Residues6
Detailsbinding site for residue CL B 402
ChainResidue
AGLN66
BILE44
BASP45
BASN46
BTYR47
BPHE50

site_idAD3
Number of Residues5
Detailsbinding site for residue GOL B 403
ChainResidue
AARG62
AARG65
BASP51
BGLU52
BHOH589

223532

PDB entries from 2024-08-07

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