Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

5NCC

Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0008812	molecular_function	choline dehydrogenase activity
A	0009507	cellular_component	chloroplast
A	0016020	cellular_component	membrane
A	0016491	molecular_function	oxidoreductase activity
A	0016614	molecular_function	oxidoreductase activity, acting on CH-OH group of donors
A	0016829	molecular_function	lyase activity
A	0019285	biological_process	glycine betaine biosynthetic process from choline
A	0050660	molecular_function	flavin adenine dinucleotide binding
B	0008812	molecular_function	choline dehydrogenase activity
B	0009507	cellular_component	chloroplast
B	0016020	cellular_component	membrane
B	0016491	molecular_function	oxidoreductase activity
B	0016614	molecular_function	oxidoreductase activity, acting on CH-OH group of donors
B	0016829	molecular_function	lyase activity
B	0019285	biological_process	glycine betaine biosynthetic process from choline
B	0050660	molecular_function	flavin adenine dinucleotide binding
C	0008812	molecular_function	choline dehydrogenase activity
C	0009507	cellular_component	chloroplast
C	0016020	cellular_component	membrane
C	0016491	molecular_function	oxidoreductase activity
C	0016614	molecular_function	oxidoreductase activity, acting on CH-OH group of donors
C	0016829	molecular_function	lyase activity
C	0019285	biological_process	glycine betaine biosynthetic process from choline
C	0050660	molecular_function	flavin adenine dinucleotide binding
D	0008812	molecular_function	choline dehydrogenase activity
D	0009507	cellular_component	chloroplast
D	0016020	cellular_component	membrane
D	0016491	molecular_function	oxidoreductase activity
D	0016614	molecular_function	oxidoreductase activity, acting on CH-OH group of donors
D	0016829	molecular_function	lyase activity
D	0019285	biological_process	glycine betaine biosynthetic process from choline
D	0050660	molecular_function	flavin adenine dinucleotide binding
E	0008812	molecular_function	choline dehydrogenase activity
E	0009507	cellular_component	chloroplast
E	0016020	cellular_component	membrane
E	0016491	molecular_function	oxidoreductase activity
E	0016614	molecular_function	oxidoreductase activity, acting on CH-OH group of donors
E	0016829	molecular_function	lyase activity
E	0019285	biological_process	glycine betaine biosynthetic process from choline
E	0050660	molecular_function	flavin adenine dinucleotide binding
F	0008812	molecular_function	choline dehydrogenase activity
F	0009507	cellular_component	chloroplast
F	0016020	cellular_component	membrane
F	0016491	molecular_function	oxidoreductase activity
F	0016614	molecular_function	oxidoreductase activity, acting on CH-OH group of donors
F	0016829	molecular_function	lyase activity
F	0019285	biological_process	glycine betaine biosynthetic process from choline
F	0050660	molecular_function	flavin adenine dinucleotide binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	36
Details	binding site for residue FAD A 701

Chain	Residue
A	GLY90
A	ALA158
A	ARG159
A	GLY160
A	ARG161
A	LEU162
A	GLY165
A	SER166
A	SER167
A	ASN170
A	ALA171
A	GLY92
A	THR172
A	LEU173
A	ALA296
A	VAL298
A	CYS340
A	ALA341
A	GLY342
A	HIS345
A	LEU349
A	ASN575
A	THR93
A	ASP609
A	ALA610
A	GLN620
A	THR621
A	GLY622
A	VAL625
A	PLM702
A	ALA94
A	LEU113
A	GLU114
A	ALA115
A	PHE134
A	TRP140

site_id	AC2
Number of Residues	12
Details	binding site for residue PLM A 702

Chain	Residue
A	ALA171
A	ARG451
A	VAL453
A	ALA457
A	GLY462
A	THR465
A	TYR466
A	PHE469
A	THR484
A	GLN486
A	ASN575
A	FAD701

site_id	AC3
Number of Residues	36
Details	binding site for residue FAD B 701

Chain	Residue
B	GLY90
B	GLY92
B	THR93
B	ALA94
B	LEU113
B	GLU114
B	ALA115
B	PHE134
B	TRP140
B	ALA158
B	ARG159
B	GLY160
B	ARG161
B	LEU162
B	GLY165
B	SER166
B	SER167
B	ASN170
B	ALA171
B	THR172
B	LEU173
B	ALA296
B	VAL298
B	CYS340
B	ALA341
B	GLY342
B	HIS345
B	LEU349
B	ASN575
B	ASP609
B	ALA610
B	GLN620
B	THR621
B	GLY622
B	VAL625
B	PLM702

site_id	AC4
Number of Residues	10
Details	binding site for residue PLM B 702

Chain	Residue
B	ALA171
B	ARG451
B	VAL453
B	MET456
B	ALA457
B	THR465
B	TYR466
B	GLN486
B	ASN575
B	FAD701

site_id	AC5
Number of Residues	34
Details	binding site for residue FAD C 701

Chain	Residue
C	GLU114
C	ALA115
C	PHE134
C	TRP140
C	ALA158
C	ARG159
C	GLY160
C	LEU162
C	GLY165
C	SER166
C	SER167
C	ASN170
C	ALA171
C	THR172
C	LEU173
C	ALA296
C	ALA297
C	VAL298
C	CYS340
C	ALA341
C	GLY342
C	HIS345
C	ASN575
C	ASP609
C	ALA610
C	GLN620
C	THR621
C	GLY622
C	VAL625
C	GLY90
C	GLY92
C	THR93
C	ALA94
C	LEU113

site_id	AC6
Number of Residues	11
Details	binding site for residue PLM C 702

Chain	Residue
C	ALA171
C	ARG451
C	VAL453
C	MET456
C	ALA457
C	GLY462
C	THR465
C	TYR466
C	GLN486
C	SER574
C	ASN575

site_id	AC7
Number of Residues	35
Details	binding site for residue FAD D 701

Chain	Residue
D	GLY90
D	GLY92
D	THR93
D	ALA94
D	LEU113
D	GLU114
D	ALA115
D	PHE134
D	TRP140
D	ALA158
D	ARG159
D	GLY160
D	LEU162
D	GLY165
D	SER166
D	SER167
D	ASN170
D	ALA171
D	THR172
D	LEU173
D	ALA296
D	ALA297
D	VAL298
D	CYS340
D	ALA341
D	GLY342
D	HIS345
D	LEU349
D	ASN575
D	ASP609
D	ALA610
D	GLN620
D	THR621
D	GLY622
D	VAL625

site_id	AC8
Number of Residues	9
Details	binding site for residue PLM D 702

Chain	Residue
D	ARG451
D	VAL453
D	GLY462
D	THR465
D	TYR466
D	THR484
D	GLN486
D	SER574
D	ASN575

site_id	AC9
Number of Residues	31
Details	binding site for residue FAD E 701

Chain	Residue
E	GLY90
E	THR93
E	LEU113
E	GLU114
E	ALA115
E	PHE134
E	TRP140
E	ALA158
E	ARG159
E	GLY160
E	LEU162
E	GLY165
E	SER166
E	SER167
E	ASN170
E	ALA171
E	THR172
E	LEU173
E	ALA296
E	ALA297
E	VAL298
E	ALA341
E	GLY342
E	HIS345
E	ASN575
E	ASP609
E	ALA610
E	GLN620
E	THR621
E	GLY622
E	VAL625

site_id	AD1
Number of Residues	32
Details	binding site for residue FAD F 701

Chain	Residue
F	GLY90
F	GLY92
F	THR93
F	ALA94
F	LEU113
F	GLU114
F	PHE134
F	TRP140
F	ALA158
F	GLY160
F	ARG161
F	LEU162
F	GLY165
F	SER166
F	THR169
F	ASN170
F	ALA171
F	THR172
F	LEU173
F	VAL298
F	CYS340
F	ALA341
F	GLY342
F	HIS345
F	LEU349
F	ASN575
F	ASP609
F	ALA610
F	GLN620
F	THR621
F	GLY622
F	VAL625

Functional Information from PROSITE/UniProt

site_id	PS00624
Number of Residues	15
Details	GMC_OXRED_2 GMC oxidoreductases signature 2. GAvhTPfLLkhSGVG

Chain	Residue	Details
A	GLY342-GLY356

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	78
Details	Binding site: {"evidences":[{"source":"PubMed","id":"28860382","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5NCC","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)