Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5NA1

NADH:quinone oxidoreductase (NDH-II) from Staphylococcus aureus - holoprotein structure - 2.32 A resolution

Replaces:  4XDB
Functional Information from GO Data
ChainGOidnamespacecontents
A0003955molecular_functionNAD(P)H dehydrogenase (quinone) activity
A0005886cellular_componentplasma membrane
A0016491molecular_functionoxidoreductase activity
A0019646biological_processaerobic electron transport chain
A0050136molecular_functionNADH:ubiquinone reductase (non-electrogenic) activity
Functional Information from PDB Data
site_idAC1
Number of Residues38
Detailsbinding site for residue FAD A 1001
ChainResidue
AGLY12
AHIS51
AALA81
AGLU82
AVAL83
AALA108
ALEU109
AGLY110
APHE111
APHE168
ATHR169
AGLY14
AGLU172
ALEU270
AGLY301
AASP302
ATHR317
ATHR318
AALA319
AGLN320
ALYS379
AHOH1104
ATYR15
AHOH1106
AHOH1109
AHOH1116
AHOH1119
AHOH1125
AHOH1138
AHOH1142
AHOH1154
AHOH1161
AALA16
AASN39
ALYS40
AASN41
AALA47
ATHR48

site_idAC2
Number of Residues6
Detailsbinding site for residue PO4 A 1002
ChainResidue
AGLU119
AGLY120
AMET121
ALYS122
AASP123
AHOH1112

site_idAC3
Number of Residues6
Detailsbinding site for residue MLI A 1003
ChainResidue
ASER358
AHIS359
ALYS373
APHE377
ALYS380
AMLI1004

site_idAC4
Number of Residues3
Detailsbinding site for residue MLI A 1004
ChainResidue
AARG88
ALYS373
AMLI1003

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: ACT_SITE => ECO:0000305|PubMed:28181562, ECO:0000305|PubMed:28801048
ChainResidueDetails
AGLU172

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:28801048
ChainResidueDetails
AGLY12
AASN39
AVAL83
AASP302
AALA319
ALYS379

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon