5N0X
Crystal structure of OphA-DeltaC6 in complex with SAM
Functional Information from GO Data
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 25 |
Details | binding site for residue SAM A 501 |
Chain | Residue |
A | ILE19 |
A | PHE171 |
A | GLN172 |
A | TYR211 |
A | ILE212 |
A | ALA213 |
A | GLY242 |
A | VAL243 |
A | SER244 |
A | THR245 |
A | HOH615 |
A | TYR98 |
A | HOH666 |
A | HOH720 |
B | SAR408 |
B | VAL409 |
B | ILE410 |
B | GLY411 |
A | GLY99 |
A | HIS100 |
A | VAL103 |
A | PHE104 |
A | VAL105 |
A | SER129 |
A | ALA130 |
site_id | AC2 |
Number of Residues | 4 |
Details | binding site for residue EDO A 502 |
Chain | Residue |
A | PHE40 |
A | LEU82 |
A | GLU86 |
A | HOH667 |
site_id | AC3 |
Number of Residues | 5 |
Details | binding site for residue MG A 503 |
Chain | Residue |
A | PHE135 |
A | ILE140 |
B | GLY102 |
B | HIS109 |
B | MET124 |
site_id | AC4 |
Number of Residues | 25 |
Details | binding site for residue SAM B 501 |
Chain | Residue |
A | SAR408 |
A | VAL409 |
A | ILE410 |
A | GLY411 |
B | ILE19 |
B | TYR98 |
B | GLY99 |
B | HIS100 |
B | VAL103 |
B | PHE104 |
B | VAL105 |
B | SER129 |
B | ALA130 |
B | PHE171 |
B | GLN172 |
B | TYR211 |
B | ILE212 |
B | ALA213 |
B | GLY242 |
B | VAL243 |
B | SER244 |
B | THR245 |
B | HOH609 |
B | HOH691 |
B | HOH737 |
site_id | AC5 |
Number of Residues | 6 |
Details | binding site for residue MG B 502 |
Chain | Residue |
A | GLY102 |
A | HIS109 |
A | MET124 |
B | PHE135 |
B | ALA136 |
B | ILE140 |
site_id | AC6 |
Number of Residues | 5 |
Details | binding site for residues SAR A 405 and MVA A 406 |
Chain | Residue |
A | VAL404 |
A | IML407 |
A | SAR408 |
B | PHE183 |
B | THR184 |
site_id | AC7 |
Number of Residues | 8 |
Details | binding site for residues MVA A 406 and IML A 407 |
Chain | Residue |
A | VAL404 |
A | SAR405 |
A | SAR408 |
B | TYR63 |
B | PHE181 |
B | ASN182 |
B | PHE183 |
B | PHE186 |
site_id | AC8 |
Number of Residues | 13 |
Details | binding site for residues IML A 407 and SAR A 408 |
Chain | Residue |
A | MVA406 |
A | VAL409 |
A | ILE410 |
B | ILE44 |
B | TYR63 |
B | TYR98 |
B | PHE181 |
B | ASN182 |
B | PHE183 |
B | PHE186 |
B | GLY242 |
B | VAL243 |
B | SAM501 |
site_id | AC9 |
Number of Residues | 4 |
Details | binding site for residues MVA B 406 and IML B 407 |
Chain | Residue |
A | TYR63 |
A | PHE183 |
A | THR184 |
B | SAR408 |
site_id | AD1 |
Number of Residues | 11 |
Details | binding site for residues IML B 407 and SAR B 408 |
Chain | Residue |
A | THR184 |
A | GLY242 |
A | VAL243 |
A | SAM501 |
B | MVA406 |
B | VAL409 |
B | ILE410 |
A | ILE44 |
A | TYR63 |
A | TYR98 |
A | PHE183 |
site_id | AD2 |
Number of Residues | 13 |
Details | binding site for Di-peptide SAR B 408 and VAL B 409 |
Chain | Residue |
A | ILE44 |
A | TYR66 |
A | ARG72 |
A | TYR76 |
A | TYR98 |
A | GLN172 |
A | GLY242 |
A | VAL243 |
A | SAM501 |
B | MVA406 |
B | IML407 |
B | ILE410 |
B | GLY411 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 6 |
Details | Active site: {"evidences":[{"source":"PubMed","id":"30151425","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"30151425","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5N0P","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0T","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0U","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI3 |
Number of Residues | 8 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"30151425","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5N0O","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0P","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0R","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0S","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0T","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0U","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0V","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0W","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0X","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N4I","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6GEW","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6QZY","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6QZZ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6R00","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6TSC","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI4 |
Number of Residues | 2 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"30151425","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5N0O","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0R","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0S","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0T","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0W","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0X","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N4I","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6QZY","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6QZZ","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI5 |
Number of Residues | 2 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"30151425","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5N0O","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0P","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0R","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0S","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0T","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0U","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0V","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0W","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0X","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N4I","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6GEW","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6QZY","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6QZZ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6R00","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6TSC","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI6 |
Number of Residues | 2 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"30151425","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5N0P","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6GEW","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI7 |
Number of Residues | 1 |
Details | Modified residue: {"description":"N-methylvaline","evidences":[{"source":"PubMed","id":"28715095","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"30151425","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"32491837","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"33574430","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI8 |
Number of Residues | 126 |
Details | Region: {"description":"Clasp domain","evidences":[{"source":"PubMed","id":"28715095","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |