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5N0X

Crystal structure of OphA-DeltaC6 in complex with SAM

Functional Information from GO Data
ChainGOidnamespacecontents
A0008168molecular_functionmethyltransferase activity
A0016740molecular_functiontransferase activity
A0032259biological_processmethylation
B0008168molecular_functionmethyltransferase activity
B0016740molecular_functiontransferase activity
B0032259biological_processmethylation
Functional Information from PDB Data
site_idAC1
Number of Residues25
Detailsbinding site for residue SAM A 501
ChainResidue
AILE19
APHE171
AGLN172
ATYR211
AILE212
AALA213
AGLY242
AVAL243
ASER244
ATHR245
AHOH615
ATYR98
AHOH666
AHOH720
BSAR408
BVAL409
BILE410
BGLY411
AGLY99
AHIS100
AVAL103
APHE104
AVAL105
ASER129
AALA130

site_idAC2
Number of Residues4
Detailsbinding site for residue EDO A 502
ChainResidue
APHE40
ALEU82
AGLU86
AHOH667

site_idAC3
Number of Residues5
Detailsbinding site for residue MG A 503
ChainResidue
APHE135
AILE140
BGLY102
BHIS109
BMET124

site_idAC4
Number of Residues25
Detailsbinding site for residue SAM B 501
ChainResidue
ASAR408
AVAL409
AILE410
AGLY411
BILE19
BTYR98
BGLY99
BHIS100
BVAL103
BPHE104
BVAL105
BSER129
BALA130
BPHE171
BGLN172
BTYR211
BILE212
BALA213
BGLY242
BVAL243
BSER244
BTHR245
BHOH609
BHOH691
BHOH737

site_idAC5
Number of Residues6
Detailsbinding site for residue MG B 502
ChainResidue
AGLY102
AHIS109
AMET124
BPHE135
BALA136
BILE140

site_idAC6
Number of Residues5
Detailsbinding site for residues SAR A 405 and MVA A 406
ChainResidue
AVAL404
AIML407
ASAR408
BPHE183
BTHR184

site_idAC7
Number of Residues8
Detailsbinding site for residues MVA A 406 and IML A 407
ChainResidue
AVAL404
ASAR405
ASAR408
BTYR63
BPHE181
BASN182
BPHE183
BPHE186

site_idAC8
Number of Residues13
Detailsbinding site for residues IML A 407 and SAR A 408
ChainResidue
AMVA406
AVAL409
AILE410
BILE44
BTYR63
BTYR98
BPHE181
BASN182
BPHE183
BPHE186
BGLY242
BVAL243
BSAM501

site_idAC9
Number of Residues4
Detailsbinding site for residues MVA B 406 and IML B 407
ChainResidue
ATYR63
APHE183
ATHR184
BSAR408

site_idAD1
Number of Residues11
Detailsbinding site for residues IML B 407 and SAR B 408
ChainResidue
ATHR184
AGLY242
AVAL243
ASAM501
BMVA406
BVAL409
BILE410
AILE44
ATYR63
ATYR98
APHE183

site_idAD2
Number of Residues13
Detailsbinding site for Di-peptide SAR B 408 and VAL B 409
ChainResidue
AILE44
ATYR66
AARG72
ATYR76
ATYR98
AGLN172
AGLY242
AVAL243
ASAM501
BMVA406
BIML407
BILE410
BGLY411

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsActive site: {"evidences":[{"source":"PubMed","id":"30151425","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"30151425","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5N0P","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0T","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0U","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"30151425","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5N0O","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0P","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0R","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0S","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0T","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0U","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0V","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0W","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0X","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N4I","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6GEW","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6QZY","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6QZZ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6R00","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6TSC","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"30151425","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5N0O","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0R","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0S","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0T","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0W","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0X","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N4I","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6QZY","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6QZZ","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"30151425","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5N0O","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0P","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0R","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0S","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0T","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0U","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0V","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0W","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0X","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N4I","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6GEW","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6QZY","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6QZZ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6R00","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6TSC","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"30151425","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5N0P","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5N0Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6GEW","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues1
DetailsModified residue: {"description":"N-methylvaline","evidences":[{"source":"PubMed","id":"28715095","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"30151425","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"32491837","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"33574430","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues126
DetailsRegion: {"description":"Clasp domain","evidences":[{"source":"PubMed","id":"28715095","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

243083

PDB entries from 2025-10-15

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