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5MRR

Crystal structure of L1 protease of Lysobacter sp. XL1

Functional Information from GO Data
ChainGOidnamespacecontents
A0004252molecular_functionserine-type endopeptidase activity
A0006508biological_processproteolysis
B0004252molecular_functionserine-type endopeptidase activity
B0006508biological_processproteolysis
C0004252molecular_functionserine-type endopeptidase activity
C0006508biological_processproteolysis
D0004252molecular_functionserine-type endopeptidase activity
D0006508biological_processproteolysis
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue SO4 A 201
ChainResidue
AARG25
AGLY26
AALA27
ATHR28
AHOH302

site_idAC2
Number of Residues5
Detailsbinding site for residue CL A 202
ChainResidue
AHOH461
AALA96
AILE97
ALYS118
AHOH347

site_idAC3
Number of Residues4
Detailsbinding site for residue CL A 203
ChainResidue
AARG184
AVAL185
AGLY186
AHOH367

site_idAC4
Number of Residues3
Detailsbinding site for residue CL A 204
ChainResidue
ALYS29
ATHR74
ALEU75

site_idAC5
Number of Residues1
Detailsbinding site for residue CL A 205
ChainResidue
AALA125

site_idAC6
Number of Residues5
Detailsbinding site for residue GOL A 206
ChainResidue
AASN167
AHOH372
AHOH393
DSER83
DTYR110

site_idAC7
Number of Residues6
Detailsbinding site for residue SO4 B 201
ChainResidue
BASN12
BARG45
BHOH319
BHOH326
CGLN191
CTYR192

site_idAC8
Number of Residues3
Detailsbinding site for residue SO4 B 202
ChainResidue
BARG45
BGLY48
BGLN50

site_idAC9
Number of Residues3
Detailsbinding site for residue CL B 203
ChainResidue
BALA96
BILE97
BLYS118

site_idAD1
Number of Residues3
Detailsbinding site for residue CL B 204
ChainResidue
BASN12
BHOH324
CARG57

site_idAD2
Number of Residues1
Detailsbinding site for residue CL B 205
ChainResidue
BSER71

site_idAD3
Number of Residues4
Detailsbinding site for residue GOL B 206
ChainResidue
BGLU126
BSER160
BGLY161
BHOH388

site_idAD4
Number of Residues8
Detailsbinding site for residue GOL B 207
ChainResidue
BARG57
BVAL58
BPHE59
BHOH304
BHOH308
CILE43
CGLN50
CHOH307

site_idAD5
Number of Residues5
Detailsbinding site for residue TRS B 208
ChainResidue
BASN62
BARG64
BPRO187
BHOH315
BHOH346

site_idAD6
Number of Residues9
Detailsbinding site for residue SO4 C 201
ChainResidue
BARG111
BARG178
BHOH398
CARG111
CARG178
CHOH334
CHOH351
CHOH387
CHOH393

site_idAD7
Number of Residues3
Detailsbinding site for residue SO4 C 202
ChainResidue
CARG45
CGLN50
CHOH374

site_idAD8
Number of Residues3
Detailsbinding site for residue CL C 203
ChainResidue
CALA95
CALA96
CHOH443

site_idAD9
Number of Residues2
Detailsbinding site for residue CL C 204
ChainResidue
CALA125
CHOH332

site_idAE1
Number of Residues7
Detailsbinding site for residue GOL C 205
ChainResidue
AGLY39
AVAL40
AARG57
BASN167
CASN81
CSER83
CHOH304

site_idAE2
Number of Residues6
Detailsbinding site for residue GOL C 206
ChainResidue
CTHR108
CARG111
CHOH310
CHOH312
CHOH318
DASN13

site_idAE3
Number of Residues8
Detailsbinding site for residue GOL C 207
ChainResidue
CHIS36
CPHE59
CTYR124
CGLU126
CSER160
CGLY161
CHOH332
CHOH368

site_idAE4
Number of Residues10
Detailsbinding site for residue SO4 D 201
ChainResidue
DARG178
DHOH332
DHOH339
DHOH374
DHOH392
AARG111
ACYS138
AARG178
AHOH403
DARG111

site_idAE5
Number of Residues5
Detailsbinding site for residue CL D 202
ChainResidue
DTYR82
DGLY109
DTYR110
DNA204
DHOH388

site_idAE6
Number of Residues5
Detailsbinding site for residue CL D 203
ChainResidue
BHOH314
DGLY39
DVAL40
DARG57
DHOH438

site_idAE7
Number of Residues6
Detailsbinding site for residue NA D 204
ChainResidue
AHOH393
DASN81
DTYR82
DSER83
DCL202
DHOH329

site_idAE8
Number of Residues6
Detailsbinding site for residue GOL D 205
ChainResidue
BGLY84
DTYR124
DGLU126
DSER160
DGLY161
DHOH381

Functional Information from PROSITE/UniProt
site_idPS00134
Number of Residues6
DetailsTRYPSIN_HIS Serine proteases, trypsin family, histidine active site. VTAGHC
ChainResidueDetails
AVAL32-CYS37

site_idPS00135
Number of Residues12
DetailsTRYPSIN_SER Serine proteases, trypsin family, serine active site. CMgrGDSGGSWF
ChainResidueDetails
ACYS138-PHE149

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PDB entries from 2024-07-24

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