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5MRM

Arabidopsis thaliana IspD in complex with Isoxazole (4)

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0008299biological_processisoprenoid biosynthetic process
A0050518molecular_function2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
A0070567molecular_functioncytidylyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues13
Detailsbinding site for residue Q9T A 401
ChainResidue
AARG157
ASER264
AVAL266
AGLU267
AHOH529
AGLN158
AVAL161
AILE177
AALA203
AGLN238
AVAL239
ALEU245
APHE249

site_idAC2
Number of Residues10
Detailsbinding site for residue TRS A 402
ChainResidue
ALYS195
ALYS195
AASP196
AALA199
AVAL200
ATYR274
AHOH532
AHOH532
AHOH577
AHOH577

site_idAC3
Number of Residues9
Detailsbinding site for residue ACT A 403
ChainResidue
APRO120
AGLU121
AGLU191
ALEU244
AHIS271
ACD407
AHOH505
AHOH535
AHOH571

site_idAC4
Number of Residues6
Detailsbinding site for residue K A 404
ChainResidue
ALYS123
AGLU141
AASP147
AHOH502
AHOH567
AHOH604

site_idAC5
Number of Residues5
Detailsbinding site for residue K A 405
ChainResidue
AGLU141
AASP169
ACD406
AHOH502
AHOH572

site_idAC6
Number of Residues5
Detailsbinding site for residue CD A 406
ChainResidue
AGLU138
AGLU141
AASP169
AK405
AHOH534

site_idAC7
Number of Residues4
Detailsbinding site for residue CD A 407
ChainResidue
AGLU121
AGLU191
AHIS271
AACT403

site_idAC8
Number of Residues5
Detailsbinding site for residue CD A 408
ChainResidue
AGLU167
AHOH514
AHOH610
AHOH624
AHOH624

Functional Information from PROSITE/UniProt
site_idPS01295
Number of Residues8
DetailsISPD 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. VCIHDSAR
ChainResidueDetails
AVAL175-ARG182

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsSITE: Transition state stabilizer => ECO:0000250
ChainResidueDetails
AARG91
ALYS98

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Positions MEP for the nucleophilic attack => ECO:0000250
ChainResidueDetails
AARG228
ALYS284

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PDB entries from 2024-10-09

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