5MKN
Crystal structure of SmAP (LSm) protein from Methanococcus vannielii
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| a | 0003723 | molecular_function | RNA binding |
| a | 0046872 | molecular_function | metal ion binding |
| a | 1990904 | cellular_component | ribonucleoprotein complex |
| A | 0003723 | molecular_function | RNA binding |
| A | 0046872 | molecular_function | metal ion binding |
| A | 1990904 | cellular_component | ribonucleoprotein complex |
| b | 0003723 | molecular_function | RNA binding |
| b | 0046872 | molecular_function | metal ion binding |
| b | 1990904 | cellular_component | ribonucleoprotein complex |
| B | 0003723 | molecular_function | RNA binding |
| B | 0046872 | molecular_function | metal ion binding |
| B | 1990904 | cellular_component | ribonucleoprotein complex |
| C | 0003723 | molecular_function | RNA binding |
| C | 0046872 | molecular_function | metal ion binding |
| C | 1990904 | cellular_component | ribonucleoprotein complex |
| d | 0003723 | molecular_function | RNA binding |
| d | 0046872 | molecular_function | metal ion binding |
| d | 1990904 | cellular_component | ribonucleoprotein complex |
| D | 0003723 | molecular_function | RNA binding |
| D | 0046872 | molecular_function | metal ion binding |
| D | 1990904 | cellular_component | ribonucleoprotein complex |
| E | 0003723 | molecular_function | RNA binding |
| E | 0046872 | molecular_function | metal ion binding |
| E | 1990904 | cellular_component | ribonucleoprotein complex |
| F | 0003723 | molecular_function | RNA binding |
| F | 0046872 | molecular_function | metal ion binding |
| F | 1990904 | cellular_component | ribonucleoprotein complex |
| G | 0003723 | molecular_function | RNA binding |
| G | 0046872 | molecular_function | metal ion binding |
| G | 1990904 | cellular_component | ribonucleoprotein complex |
| H | 0003723 | molecular_function | RNA binding |
| H | 0046872 | molecular_function | metal ion binding |
| H | 1990904 | cellular_component | ribonucleoprotein complex |
| I | 0003723 | molecular_function | RNA binding |
| I | 0046872 | molecular_function | metal ion binding |
| I | 1990904 | cellular_component | ribonucleoprotein complex |
| J | 0003723 | molecular_function | RNA binding |
| J | 0046872 | molecular_function | metal ion binding |
| J | 1990904 | cellular_component | ribonucleoprotein complex |
| K | 0003723 | molecular_function | RNA binding |
| K | 0046872 | molecular_function | metal ion binding |
| K | 1990904 | cellular_component | ribonucleoprotein complex |
| L | 0003723 | molecular_function | RNA binding |
| L | 0046872 | molecular_function | metal ion binding |
| L | 1990904 | cellular_component | ribonucleoprotein complex |
| M | 0003723 | molecular_function | RNA binding |
| M | 0046872 | molecular_function | metal ion binding |
| M | 1990904 | cellular_component | ribonucleoprotein complex |
| N | 0003723 | molecular_function | RNA binding |
| N | 0046872 | molecular_function | metal ion binding |
| N | 1990904 | cellular_component | ribonucleoprotein complex |
| O | 0003723 | molecular_function | RNA binding |
| O | 0046872 | molecular_function | metal ion binding |
| O | 1990904 | cellular_component | ribonucleoprotein complex |
| P | 0003723 | molecular_function | RNA binding |
| P | 0046872 | molecular_function | metal ion binding |
| P | 1990904 | cellular_component | ribonucleoprotein complex |
| Q | 0003723 | molecular_function | RNA binding |
| Q | 0046872 | molecular_function | metal ion binding |
| Q | 1990904 | cellular_component | ribonucleoprotein complex |
| R | 0003723 | molecular_function | RNA binding |
| R | 0046872 | molecular_function | metal ion binding |
| R | 1990904 | cellular_component | ribonucleoprotein complex |
| T | 0003723 | molecular_function | RNA binding |
| T | 0046872 | molecular_function | metal ion binding |
| T | 1990904 | cellular_component | ribonucleoprotein complex |
| U | 0003723 | molecular_function | RNA binding |
| U | 0046872 | molecular_function | metal ion binding |
| U | 1990904 | cellular_component | ribonucleoprotein complex |
| V | 0003723 | molecular_function | RNA binding |
| V | 0046872 | molecular_function | metal ion binding |
| V | 1990904 | cellular_component | ribonucleoprotein complex |
| W | 0003723 | molecular_function | RNA binding |
| W | 0046872 | molecular_function | metal ion binding |
| W | 1990904 | cellular_component | ribonucleoprotein complex |
| X | 0003723 | molecular_function | RNA binding |
| X | 0046872 | molecular_function | metal ion binding |
| X | 1990904 | cellular_component | ribonucleoprotein complex |
| Y | 0003723 | molecular_function | RNA binding |
| Y | 0046872 | molecular_function | metal ion binding |
| Y | 1990904 | cellular_component | ribonucleoprotein complex |
| Z | 0003723 | molecular_function | RNA binding |
| Z | 0046872 | molecular_function | metal ion binding |
| Z | 1990904 | cellular_component | ribonucleoprotein complex |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 9 |
| Details | binding site for residue U5P A 101 |
| Chain | Residue |
| A | HIS39 |
| A | ASN41 |
| A | ARG63 |
| A | ASP65 |
| B | ARG63 |
| B | U5P101 |
| G | LEU38 |
| G | MET40 |
| G | U5P101 |
| site_id | AC2 |
| Number of Residues | 9 |
| Details | binding site for residue U5P B 101 |
| Chain | Residue |
| A | LEU38 |
| A | MET40 |
| A | U5P101 |
| B | HIS39 |
| B | ASN41 |
| B | ARG63 |
| B | ASP65 |
| C | ARG63 |
| C | U5P101 |
| site_id | AC3 |
| Number of Residues | 3 |
| Details | binding site for residue PG4 B 102 |
| Chain | Residue |
| A | LEU8 |
| B | ASP37 |
| T | ASP37 |
| site_id | AC4 |
| Number of Residues | 9 |
| Details | binding site for residue U5P C 101 |
| Chain | Residue |
| B | LEU38 |
| B | MET40 |
| B | U5P101 |
| C | HIS39 |
| C | ASN41 |
| C | ARG63 |
| C | ASP65 |
| D | ARG63 |
| D | U5P101 |
| site_id | AC5 |
| Number of Residues | 8 |
| Details | binding site for residue U5P D 101 |
| Chain | Residue |
| C | LEU38 |
| C | U5P101 |
| D | HIS39 |
| D | ASN41 |
| D | ARG63 |
| D | ASP65 |
| E | ARG63 |
| E | U5P101 |
| site_id | AC6 |
| Number of Residues | 4 |
| Details | binding site for residue PG4 D 102 |
| Chain | Residue |
| D | ASP37 |
| D | HOH202 |
| Q | ARG6 |
| R | ASP37 |
| site_id | AC7 |
| Number of Residues | 10 |
| Details | binding site for residue U5P E 101 |
| Chain | Residue |
| D | LEU38 |
| D | MET40 |
| D | U5P101 |
| E | HIS39 |
| E | ASN41 |
| E | ARG63 |
| E | GLY64 |
| E | ASP65 |
| F | ARG63 |
| F | U5P101 |
| site_id | AC8 |
| Number of Residues | 3 |
| Details | binding site for residue PG4 E 102 |
| Chain | Residue |
| E | ASP37 |
| E | HOH202 |
| P | ARG6 |
| site_id | AC9 |
| Number of Residues | 10 |
| Details | binding site for residue U5P F 101 |
| Chain | Residue |
| E | LEU38 |
| E | U5P101 |
| F | HIS39 |
| F | ASN41 |
| F | ARG63 |
| F | GLY64 |
| F | ASP65 |
| F | HOH201 |
| G | ARG63 |
| G | U5P101 |
| site_id | AD1 |
| Number of Residues | 6 |
| Details | binding site for residue U5P F 102 |
| Chain | Residue |
| F | ARG6 |
| F | PRO7 |
| F | LEU8 |
| F | LEU38 |
| G | ASP37 |
| U | U5P102 |
| site_id | AD2 |
| Number of Residues | 9 |
| Details | binding site for residue U5P G 101 |
| Chain | Residue |
| A | ARG63 |
| A | U5P101 |
| F | LEU38 |
| F | MET40 |
| F | U5P101 |
| G | HIS39 |
| G | ASN41 |
| G | ARG63 |
| G | ASP65 |
| site_id | AD3 |
| Number of Residues | 1 |
| Details | binding site for residue PG4 G 102 |
| Chain | Residue |
| G | ARG6 |
| site_id | AD4 |
| Number of Residues | 11 |
| Details | binding site for residue U5P H 101 |
| Chain | Residue |
| H | HIS39 |
| H | ASN41 |
| H | ARG63 |
| H | GLY64 |
| H | ASP65 |
| H | HOH201 |
| I | ARG63 |
| I | U5P101 |
| N | LEU38 |
| N | MET40 |
| N | U5P101 |
| site_id | AD5 |
| Number of Residues | 9 |
| Details | binding site for residue U5P I 101 |
| Chain | Residue |
| J | ARG63 |
| J | U5P101 |
| H | LEU38 |
| H | MET40 |
| H | U5P101 |
| I | HIS39 |
| I | ASN41 |
| I | ARG63 |
| I | ASP65 |
| site_id | AD6 |
| Number of Residues | 10 |
| Details | binding site for residue U5P J 101 |
| Chain | Residue |
| I | LEU38 |
| I | MET40 |
| I | U5P101 |
| J | HIS39 |
| J | ASN41 |
| J | ARG63 |
| J | GLY64 |
| J | ASP65 |
| K | ARG63 |
| K | U5P101 |
| site_id | AD7 |
| Number of Residues | 5 |
| Details | binding site for residue PG4 J 102 |
| Chain | Residue |
| J | ARG6 |
| J | PRO7 |
| J | LEU8 |
| J | LEU38 |
| K | ASP37 |
| site_id | AD8 |
| Number of Residues | 9 |
| Details | binding site for residue U5P K 101 |
| Chain | Residue |
| J | LEU38 |
| J | U5P101 |
| K | HIS39 |
| K | ASN41 |
| K | ARG63 |
| K | GLY64 |
| K | ASP65 |
| L | ARG63 |
| L | U5P101 |
| site_id | AD9 |
| Number of Residues | 11 |
| Details | binding site for residue U5P L 101 |
| Chain | Residue |
| K | LEU38 |
| K | HIS39 |
| K | MET40 |
| K | U5P101 |
| L | HIS39 |
| L | ASN41 |
| L | ARG63 |
| L | GLY64 |
| L | ASP65 |
| M | ARG63 |
| M | U5P101 |
| site_id | AE1 |
| Number of Residues | 10 |
| Details | binding site for residue U5P M 101 |
| Chain | Residue |
| L | LEU38 |
| L | MET40 |
| L | U5P101 |
| M | HIS39 |
| M | ASN41 |
| M | ARG63 |
| M | GLY64 |
| M | ASP65 |
| N | ARG63 |
| N | U5P101 |
| site_id | AE2 |
| Number of Residues | 5 |
| Details | binding site for residue PG4 M 102 |
| Chain | Residue |
| M | ARG6 |
| M | PRO7 |
| M | LEU8 |
| M | LEU38 |
| N | ASP37 |
| site_id | AE3 |
| Number of Residues | 10 |
| Details | binding site for residue U5P N 101 |
| Chain | Residue |
| H | ARG63 |
| H | U5P101 |
| M | LEU38 |
| M | MET40 |
| M | U5P101 |
| N | HIS39 |
| N | ASN41 |
| N | ARG63 |
| N | GLY64 |
| N | ASP65 |
| site_id | AE4 |
| Number of Residues | 9 |
| Details | binding site for residue U5P O 101 |
| Chain | Residue |
| O | HIS39 |
| O | ASN41 |
| O | ARG63 |
| O | ASP65 |
| P | ARG63 |
| P | U5P101 |
| U | LEU38 |
| U | MET40 |
| U | U5P101 |
| site_id | AE5 |
| Number of Residues | 9 |
| Details | binding site for residue U5P P 101 |
| Chain | Residue |
| O | LEU38 |
| O | U5P101 |
| P | HIS39 |
| P | ASN41 |
| P | ARG63 |
| P | GLY64 |
| P | ASP65 |
| Q | ARG63 |
| Q | U5P101 |
| site_id | AE6 |
| Number of Residues | 9 |
| Details | binding site for residue U5P Q 101 |
| Chain | Residue |
| P | LEU38 |
| P | MET40 |
| P | U5P101 |
| Q | HIS39 |
| Q | ASN41 |
| Q | ARG63 |
| Q | ASP65 |
| R | ARG63 |
| R | U5P101 |
| site_id | AE7 |
| Number of Residues | 9 |
| Details | binding site for residue U5P R 101 |
| Chain | Residue |
| Q | LEU38 |
| Q | MET40 |
| Q | U5P101 |
| R | HIS39 |
| R | ASN41 |
| R | ARG63 |
| R | ASP65 |
| d | ARG63 |
| d | U5P101 |
| site_id | AE8 |
| Number of Residues | 10 |
| Details | binding site for residue U5P T 101 |
| Chain | Residue |
| T | HIS39 |
| T | ASN41 |
| T | ARG63 |
| T | GLY64 |
| T | ASP65 |
| U | ARG63 |
| U | U5P101 |
| d | LEU38 |
| d | MET40 |
| d | U5P101 |
| site_id | AE9 |
| Number of Residues | 10 |
| Details | binding site for residue U5P U 101 |
| Chain | Residue |
| O | ARG63 |
| O | U5P101 |
| T | LEU38 |
| T | MET40 |
| T | U5P101 |
| U | HIS39 |
| U | ASN41 |
| U | ARG63 |
| U | GLY64 |
| U | ASP65 |
| site_id | AF1 |
| Number of Residues | 6 |
| Details | binding site for residue U5P U 102 |
| Chain | Residue |
| F | U5P102 |
| O | ASP37 |
| U | ARG6 |
| U | PRO7 |
| U | LEU8 |
| U | LEU38 |
| site_id | AF2 |
| Number of Residues | 8 |
| Details | binding site for residue U5P V 101 |
| Chain | Residue |
| V | HIS39 |
| V | ASN41 |
| V | ARG63 |
| V | ASP65 |
| W | ARG63 |
| W | U5P101 |
| b | LEU38 |
| b | U5P101 |
| site_id | AF3 |
| Number of Residues | 8 |
| Details | binding site for residue U5P W 101 |
| Chain | Residue |
| V | LEU38 |
| V | U5P101 |
| W | HIS39 |
| W | ASN41 |
| W | ARG63 |
| W | ASP65 |
| X | ARG63 |
| X | U5P101 |
| site_id | AF4 |
| Number of Residues | 1 |
| Details | binding site for residue PG4 W 102 |
| Chain | Residue |
| W | HOH202 |
| site_id | AF5 |
| Number of Residues | 9 |
| Details | binding site for residue U5P X 101 |
| Chain | Residue |
| W | LEU38 |
| W | U5P101 |
| X | HIS39 |
| X | ASN41 |
| X | ARG63 |
| X | GLY64 |
| X | ASP65 |
| Y | ARG63 |
| Y | U5P101 |
| site_id | AF6 |
| Number of Residues | 10 |
| Details | binding site for residue U5P Y 101 |
| Chain | Residue |
| X | LEU38 |
| X | MET40 |
| X | U5P101 |
| Y | HIS39 |
| Y | ASN41 |
| Y | ARG63 |
| Y | GLY64 |
| Y | ASP65 |
| Z | ARG63 |
| Z | U5P101 |
| site_id | AF7 |
| Number of Residues | 9 |
| Details | binding site for residue U5P Z 101 |
| Chain | Residue |
| Y | LEU38 |
| Y | U5P101 |
| Z | HIS39 |
| Z | ASN41 |
| Z | ARG63 |
| Z | GLY64 |
| Z | ASP65 |
| a | ARG63 |
| a | U5P101 |
| site_id | AF8 |
| Number of Residues | 2 |
| Details | binding site for residue PG4 Z 102 |
| Chain | Residue |
| Z | ASP37 |
| Z | HOH202 |
| site_id | AF9 |
| Number of Residues | 6 |
| Details | binding site for residue U5P a 101 |
| Chain | Residue |
| Z | LEU38 |
| Z | U5P101 |
| a | HIS39 |
| a | ASN41 |
| a | ARG63 |
| a | ASP65 |
| site_id | AG1 |
| Number of Residues | 9 |
| Details | binding site for residue U5P b 101 |
| Chain | Residue |
| V | ARG63 |
| V | U5P101 |
| a | LEU38 |
| a | MET40 |
| b | HIS39 |
| b | ASN41 |
| b | ARG63 |
| b | GLY64 |
| b | ASP65 |
| site_id | AG2 |
| Number of Residues | 10 |
| Details | binding site for residue U5P d 101 |
| Chain | Residue |
| R | LEU38 |
| R | MET40 |
| R | U5P101 |
| T | ARG63 |
| T | U5P101 |
| d | HIS39 |
| d | ASN41 |
| d | ARG63 |
| d | GLY64 |
| d | ASP65 |
| site_id | AG3 |
| Number of Residues | 2 |
| Details | binding site for residue PG4 d 102 |
| Chain | Residue |
| d | ASP37 |
| d | HOH201 |
