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5MHO

FXIIIa in complex with the inhibitor ZED2369

Functional Information from GO Data
ChainGOidnamespacecontents
A0003810molecular_functionprotein-glutamine gamma-glutamyltransferase activity
A0005515molecular_functionprotein binding
A0005576cellular_componentextracellular region
A0005615cellular_componentextracellular space
A0005737cellular_componentcytoplasm
A0007596biological_processblood coagulation
A0016746molecular_functionacyltransferase activity
A0018149biological_processpeptide cross-linking
A0031093cellular_componentplatelet alpha granule lumen
A0046872molecular_functionmetal ion binding
A0062023cellular_componentcollagen-containing extracellular matrix
A0072378biological_processblood coagulation, fibrin clot formation
A0072562cellular_componentblood microparticle
A1990234cellular_componenttransferase complex
B0003810molecular_functionprotein-glutamine gamma-glutamyltransferase activity
B0005515molecular_functionprotein binding
B0005576cellular_componentextracellular region
B0005615cellular_componentextracellular space
B0005737cellular_componentcytoplasm
B0007596biological_processblood coagulation
B0016746molecular_functionacyltransferase activity
B0018149biological_processpeptide cross-linking
B0031093cellular_componentplatelet alpha granule lumen
B0046872molecular_functionmetal ion binding
B0062023cellular_componentcollagen-containing extracellular matrix
B0072378biological_processblood coagulation, fibrin clot formation
B0072562cellular_componentblood microparticle
B1990234cellular_componenttransferase complex
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue CA A 801
ChainResidue
AALA264
AASN267
ALYS269
AASP271

site_idAC2
Number of Residues6
Detailsbinding site for residue CA A 802
ChainResidue
AASP367
AASP343
AASP345
AASN347
AGLN349
AASP351

site_idAC3
Number of Residues5
Detailsbinding site for residue CA A 803
ChainResidue
AASN436
AASP438
AALA457
AGLU485
AGLU490

site_idAC4
Number of Residues4
Detailsbinding site for residue SO4 A 804
ChainResidue
AHIS51
ALEU52
APHE53
ALYS54

site_idAC5
Number of Residues4
Detailsbinding site for residue CA B 801
ChainResidue
BALA264
BASN267
BLYS269
BASP271

site_idAC6
Number of Residues6
Detailsbinding site for residue CA B 802
ChainResidue
BASP343
BASP345
BASN347
BGLN349
BASP351
BASP367

site_idAC7
Number of Residues4
Detailsbinding site for residue CA B 803
ChainResidue
BASN436
BALA457
BGLU485
BGLU490

site_idAC8
Number of Residues4
Detailsbinding site for residue SO4 B 804
ChainResidue
BHIS51
BLEU52
BPHE53
BLYS54

site_idAC9
Number of Residues3
Detailsbinding site for residue SO4 B 805
ChainResidue
BLYS269
BASP270
BARG681

site_idAD1
Number of Residues10
Detailsbinding site for residues TRM G 1 and 1TX G 2
ChainResidue
ATYR214
AARG223
ATRP279
ACYS314
ATRP370
AASN371
ATYR372
AHIS373
AGLN400
GLEU3

site_idAD2
Number of Residues10
Detailsbinding site for Di-peptide 1TX G 2 and LEU G 3
ChainResidue
ATRP279
ACYS314
ATRP370
AASN371
ATYR372
AHIS373
AGLN400
GTRM1
GILE4
GLEU5

site_idAD3
Number of Residues10
Detailsbinding site for residues TRM H 1 and 1TX H 2
ChainResidue
BARG223
BTRP279
BCYS314
BTRP315
BTRP370
BASN371
BTYR372
BHIS373
BGLN400
HLEU3

site_idAD4
Number of Residues10
Detailsbinding site for Di-peptide 1TX H 2 and LEU H 3
ChainResidue
BTRP279
BCYS314
BTRP370
BASN371
BTYR372
BHIS373
BGLN400
HTRM1
HILE4
HLEU5

site_idAD5
Number of Residues3
Detailsbinding site for Di-peptide PRO H 8 and NH2 H 9
ChainResidue
BTYR441
HPRO6
HTRP7

Functional Information from PROSITE/UniProt
site_idPS00547
Number of Residues18
DetailsTRANSGLUTAMINASES Transglutaminases active site. GQCWVfAGVfnTfLRCLG
ChainResidueDetails
AGLY312-GLY329

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsACT_SITE: ACT_SITE => ECO:0000269|PubMed:7913750
ChainResidueDetails
ACYS314
AHIS373
AASP396
BCYS314
BHIS373
BASP396

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:9988734
ChainResidueDetails
AASN436
AASP438
AGLU485
AGLU490
BASN436
BASP438
BGLU485
BGLU490

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Cleavage; by thrombin; to produce active factor XIII-A
ChainResidueDetails
AARG37
BARG37

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: N-acetylserine => ECO:0000305|PubMed:2877456
ChainResidueDetails
ASER1
BSER1

site_idSWS_FT_FI5
Number of Residues2
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:16335952
ChainResidueDetails
AASN613
BASN613

Catalytic Information from CSA
site_idMCSA1
Number of Residues5
DetailsM-CSA 149
ChainResidueDetails
ATRP279electrostatic stabiliser, hydrogen bond donor
ACYS314electrostatic stabiliser
AHIS373electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
AASP396electrostatic stabiliser, hydrogen bond acceptor
ATYR560electrostatic stabiliser, hydrogen bond donor

site_idMCSA2
Number of Residues5
DetailsM-CSA 149
ChainResidueDetails
BTRP279electrostatic stabiliser, hydrogen bond donor
BCYS314electrostatic stabiliser
BHIS373electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
BASP396electrostatic stabiliser, hydrogen bond acceptor
BTYR560electrostatic stabiliser, hydrogen bond donor

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PDB entries from 2024-08-07

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