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5MDK

Crystal structure of an O2-tolerant [NiFe]-hydrogenase from Ralstonia eutropha in its as-isolated form (oxidized state - state 3)

Functional Information from GO Data
ChainGOidnamespacecontents
L0005515molecular_functionprotein binding
L0005886cellular_componentplasma membrane
L0008901molecular_functionferredoxin hydrogenase activity
L0016151molecular_functionnickel cation binding
L0016491molecular_functionoxidoreductase activity
L0033748molecular_functionhydrogenase (acceptor) activity
L0046872molecular_functionmetal ion binding
S0005515molecular_functionprotein binding
S0005886cellular_componentplasma membrane
S0008901molecular_functionferredoxin hydrogenase activity
S0009055molecular_functionelectron transfer activity
S0009061biological_processanaerobic respiration
S0009375cellular_componentferredoxin hydrogenase complex
S0016020cellular_componentmembrane
S0016491molecular_functionoxidoreductase activity
S0033748molecular_functionhydrogenase (acceptor) activity
S0044569cellular_component[Ni-Fe] hydrogenase complex
S0046872molecular_functionmetal ion binding
S0051536molecular_functioniron-sulfur cluster binding
S0051538molecular_function3 iron, 4 sulfur cluster binding
S0051539molecular_function4 iron, 4 sulfur cluster binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue MG L 701
ChainResidue
LGLU56
LCYS549
LHIS603
LHOH814
LHOH827
LHOH829

site_idAC2
Number of Residues5
Detailsbinding site for residue CL L 702
ChainResidue
LGLN548
LHOH1098
LLYS60
LVAL369
LTHR370

site_idAC3
Number of Residues1
Detailsbinding site for residue CL L 703
ChainResidue
LGLN459

site_idAC4
Number of Residues13
Detailsbinding site for residue NFV L 704
ChainResidue
LCYS75
LCYS78
LCYS81
LHIS82
LALA528
LPRO529
LARG530
LLEU533
LVAL551
LPRO552
LTHR553
LCYS597
LCYS600

site_idAC5
Number of Residues3
Detailsbinding site for residue CL S 401
ChainResidue
STRP118
SCYS120
SGLY256

site_idAC6
Number of Residues7
Detailsbinding site for residue SF4 S 402
ChainResidue
SHIS187
SCYS190
SARG193
SCYS215
SLEU216
SCYS221
SILE243

site_idAC7
Number of Residues9
Detailsbinding site for residue F3S S 403
ChainResidue
LLYS226
STHR226
SASN228
SCYS230
STRP235
SPRO242
SCYS249
SILE250
SCYS252

site_idAC8
Number of Residues11
Detailsbinding site for residue F4S S 404
ChainResidue
SGLU16
SCYS17
STHR18
SCYS19
SCYS20
SGLU76
SSER114
SCYS115
SCYS120
SGLY148
SCYS149

Functional Information from PROSITE/UniProt
site_idPS00507
Number of Residues26
DetailsNI_HGENASE_L_1 Nickel-dependent hydrogenases large subunit signature 1. RGLEvilkgrdprdawafvERiCGVC
ChainResidueDetails
LARG53-CYS78

site_idPS00508
Number of Residues10
DetailsNI_HGENASE_L_2 Nickel-dependent hydrogenases large subunit signature 2. FDPCLACst.H
ChainResidueDetails
LPHE594-HIS603

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues11
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P21853
ChainResidueDetails
SCYS17
SCYS249
SCYS252
SCYS20
SCYS115
SCYS149
SHIS187
SCYS190
SCYS215
SCYS221
SCYS230

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PDB entries from 2024-07-24

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