5M6D
Streptococcus pneumoniae Glyceraldehyde-3-Phosphate Dehydrogenase (SpGAPDH) crystal structure
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0004365 | molecular_function | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0006006 | biological_process | glucose metabolic process |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0050661 | molecular_function | NADP binding |
| A | 0051287 | molecular_function | NAD binding |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0004365 | molecular_function | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0006006 | biological_process | glucose metabolic process |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0050661 | molecular_function | NADP binding |
| B | 0051287 | molecular_function | NAD binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | binding site for residue CL A 401 |
| Chain | Residue |
| A | THR231 |
| A | GLY232 |
| A | ALA234 |
| A | LYS235 |
| A | GLY250 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | binding site for residue CA A 402 |
| Chain | Residue |
| A | HOH626 |
| A | ILE41 |
| A | VAL44 |
| A | VAL47 |
| A | HOH580 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | binding site for residue ACY A 403 |
| Chain | Residue |
| A | LEU269 |
| A | ASN272 |
| A | GLY323 |
| A | GLN325 |
| site_id | AC4 |
| Number of Residues | 9 |
| Details | binding site for residue GOL B 401 |
| Chain | Residue |
| B | ARG32 |
| B | ILE33 |
| B | CSU171 |
| B | HIS198 |
| B | THR201 |
| B | ASN335 |
| B | GOL402 |
| B | GOL403 |
| B | HOH520 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | binding site for residue GOL B 402 |
| Chain | Residue |
| B | ILE33 |
| B | THR140 |
| B | CSU171 |
| B | GOL401 |
| B | GOL403 |
| B | HOH567 |
| site_id | AC6 |
| Number of Residues | 6 |
| Details | binding site for residue GOL B 403 |
| Chain | Residue |
| B | GLY31 |
| B | ARG32 |
| B | ILE33 |
| B | GOL401 |
| B | GOL402 |
| B | HOH531 |
| site_id | AC7 |
| Number of Residues | 5 |
| Details | binding site for residue CL B 404 |
| Chain | Residue |
| B | THR231 |
| B | GLY232 |
| B | ALA234 |
| B | LYS235 |
| B | GLY250 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | binding site for residue ACY B 405 |
| Chain | Residue |
| A | HIS10 |
| A | HIS12 |
| B | GLN71 |
| B | GLY72 |
| B | ARG73 |
| B | ASP75 |
Functional Information from PROSITE/UniProt
| site_id | PS00071 |
| Number of Residues | 8 |
| Details | GAPDH Glyceraldehyde 3-phosphate dehydrogenase active site. ASCTTNcL |
| Chain | Residue | Details |
| A | ALA169-LEU176 |
