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5LXH

GABARAP-L1 ATG4B LIR Complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0000045biological_processautophagosome assembly
A0000421cellular_componentautophagosome membrane
A0005515molecular_functionprotein binding
A0005543molecular_functionphospholipid binding
A0005737cellular_componentcytoplasm
A0005739cellular_componentmitochondrion
A0005776cellular_componentautophagosome
A0005783cellular_componentendoplasmic reticulum
A0005794cellular_componentGolgi apparatus
A0005829cellular_componentcytosol
A0005856cellular_componentcytoskeleton
A0005874cellular_componentmicrotubule
A0006914biological_processautophagy
A0006995biological_processcellular response to nitrogen starvation
A0008429molecular_functionphosphatidylethanolamine binding
A0016020cellular_componentmembrane
A0030659cellular_componentcytoplasmic vesicle membrane
A0030957molecular_functionTat protein binding
A0031410cellular_componentcytoplasmic vesicle
A0031625molecular_functionubiquitin protein ligase binding
A0048487molecular_functionbeta-tubulin binding
A0050811molecular_functionGABA receptor binding
A0061723biological_processglycophagy
A0097352biological_processautophagosome maturation
B0000045biological_processautophagosome assembly
B0000421cellular_componentautophagosome membrane
B0005515molecular_functionprotein binding
B0005543molecular_functionphospholipid binding
B0005737cellular_componentcytoplasm
B0005739cellular_componentmitochondrion
B0005776cellular_componentautophagosome
B0005783cellular_componentendoplasmic reticulum
B0005794cellular_componentGolgi apparatus
B0005829cellular_componentcytosol
B0005856cellular_componentcytoskeleton
B0005874cellular_componentmicrotubule
B0006914biological_processautophagy
B0006995biological_processcellular response to nitrogen starvation
B0008429molecular_functionphosphatidylethanolamine binding
B0016020cellular_componentmembrane
B0030659cellular_componentcytoplasmic vesicle membrane
B0030957molecular_functionTat protein binding
B0031410cellular_componentcytoplasmic vesicle
B0031625molecular_functionubiquitin protein ligase binding
B0048487molecular_functionbeta-tubulin binding
B0050811molecular_functionGABA receptor binding
B0061723biological_processglycophagy
B0097352biological_processautophagosome maturation
C0000045biological_processautophagosome assembly
C0000421cellular_componentautophagosome membrane
C0005515molecular_functionprotein binding
C0005543molecular_functionphospholipid binding
C0005737cellular_componentcytoplasm
C0005739cellular_componentmitochondrion
C0005776cellular_componentautophagosome
C0005783cellular_componentendoplasmic reticulum
C0005794cellular_componentGolgi apparatus
C0005829cellular_componentcytosol
C0005856cellular_componentcytoskeleton
C0005874cellular_componentmicrotubule
C0006914biological_processautophagy
C0006995biological_processcellular response to nitrogen starvation
C0008429molecular_functionphosphatidylethanolamine binding
C0016020cellular_componentmembrane
C0030659cellular_componentcytoplasmic vesicle membrane
C0030957molecular_functionTat protein binding
C0031410cellular_componentcytoplasmic vesicle
C0031625molecular_functionubiquitin protein ligase binding
C0048487molecular_functionbeta-tubulin binding
C0050811molecular_functionGABA receptor binding
C0061723biological_processglycophagy
C0097352biological_processautophagosome maturation
Functional Information from PDB Data
site_idAC1
Number of Residues8
Detailsbinding site for residue SO4 A 201
ChainResidue
AASP45
ALYS46
AARG47
ALYS48
AHOH303
AHOH341
BHIS69
EASP387

site_idAC2
Number of Residues8
Detailsbinding site for residue SO4 B 201
ChainResidue
BASP45
BLYS46
BARG47
BLYS48
BSO4203
BHOH333
FASP387
AHIS69

site_idAC3
Number of Residues2
Detailsbinding site for residue SO4 B 202
ChainResidue
BARG14
CGLU101

site_idAC4
Number of Residues8
Detailsbinding site for residue SO4 B 203
ChainResidue
BTYR5
BASP8
BHIS9
BLYS48
BSO4201
BHOH311
BHOH319
CTHR83

site_idAC5
Number of Residues9
Detailsbinding site for residue GOL B 204
ChainResidue
BPHE79
BVAL80
BASN81
BASN82
BTYR106
BALA108
BHOH302
BHOH315
BHOH363

site_idAC6
Number of Residues6
Detailsbinding site for residue GOL B 205
ChainResidue
AHOH315
BARG22
BGLU96
BTYR103
BHOH301
BHOH334

site_idAC7
Number of Residues8
Detailsbinding site for residue SO4 C 201
ChainResidue
AGLN93
AGLU96
CLYS46
CARG47
CLYS48
CSO4202
CHOH302
GASP387

site_idAC8
Number of Residues6
Detailsbinding site for residue SO4 C 202
ChainResidue
CTYR5
CASP8
CHIS9
CLYS48
CSO4201
CHOH302

site_idAC9
Number of Residues8
Detailsbinding site for residue SO4 C 203
ChainResidue
CARG71
CGLU73
CASP74
CSER113
CVAL114
CTYR115
CGLY116
CLYS117

site_idAD1
Number of Residues5
Detailsbinding site for residue GOL C 204
ChainResidue
CGLU34
CLYS35
CARG47
CHOH310
CHOH334

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsMOD_RES: Phosphoserine => ECO:0000269|PubMed:26378241
ChainResidueDetails
ESER392
FSER392
GSER392

site_idSWS_FT_FI2
Number of Residues3
DetailsSITE: Cleavage; by ATG4B => ECO:0000269|PubMed:20404487
ChainResidueDetails
AGLY116
BGLY116
CGLY116

site_idSWS_FT_FI3
Number of Residues3
DetailsLIPID: Phosphatidylserine amidated glycine; alternate => ECO:0000269|PubMed:33909989
ChainResidueDetails
AGLY116
BGLY116
CGLY116

219869

PDB entries from 2024-05-15

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