5LR4

RNA duplex has central consecutive GA pairs flanked by G-U basepairs with a methyl group on the adenine N6

Functional Information from PDB Data

site_id	AC1
Number of Residues	1
Details	binding site for residue NA A 101

Chain	Residue
A	CBV2

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site_id	AC2
Number of Residues	3
Details	binding site for residue NA C 101

Chain	Residue
C	CBV2
C	C3
C	HOH207

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site_id	AC3
Number of Residues	1
Details	binding site for residue NA C 102

Chain	Residue
C	CBV2

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site_id	AC4
Number of Residues	1
Details	binding site for residue NA D 101

Chain	Residue
D	G1

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site_id	AC5
Number of Residues	9
Details	binding site for Di-nucleotide G B 1 and CBV B 2

Chain	Residue
A	HOH207
B	C3
B	C10
B	HOH103
B	HOH104
B	HOH109
A	G1
A	G9
A	C10

---

site_id	AC6
Number of Residues	9
Details	binding site for Di-nucleotide CBV B 2 and C B 3

Chain	Residue
A	G8
A	G9
A	C10
A	HOH207
B	G1
B	G4
B	HOH109
B	HOH111
B	HOH115

---

site_id	AC7
Number of Residues	7
Details	binding site for Di-nucleotide G B 5 and 6MZ B 6

Chain	Residue
A	G5
A	6MZ6
B	G4
B	U7
B	HOH113
C	G9
C	C10

---

site_id	AC8
Number of Residues	9
Details	binding site for Di-nucleotide G C 1 and CBV C 2

Chain	Residue
C	C3
C	NA101
C	NA102
C	HOH206
C	HOH207
C	HOH210
D	G9
D	C10
D	C10

---

site_id	AC9
Number of Residues	12
Details	binding site for Di-nucleotide CBV C 2 and C C 3

Chain	Residue
B	C10
C	G1
C	G4
C	NA101
C	NA102
C	HOH202
C	HOH205
C	HOH207
C	HOH211
D	G8
D	G9
D	C10

---

site_id	AD1
Number of Residues	7
Details	binding site for Di-nucleotide G C 5 and 6MZ C 6

Chain	Residue
C	G4
C	U7
C	HOH208
D	G5
D	6MZ6
D	HOH205
D	HOH208

---

site_id	AD2
Number of Residues	8
Details	binding site for Di-nucleotide G D 1 and CBV D 2

Chain	Residue
C	G9
C	C10
C	C10
C	HOH204
D	C3
D	NA101
D	HOH207
D	HOH214

---

site_id	AD3
Number of Residues	8
Details	binding site for Di-nucleotide CBV D 2 and C D 3

Chain	Residue
A	U7
C	G8
C	G9
C	C10
D	G1
D	G4
D	HOH207
D	HOH211

---

site_id	AD4
Number of Residues	10
Details	binding site for Di-nucleotide G D 5 and 6MZ D 6

Chain	Residue
C	G5
C	6MZ6
C	U7
D	G4
D	U7
D	HOH201
D	HOH204
D	HOH205
D	HOH208
D	HOH212

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