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5LR4

RNA duplex has central consecutive GA pairs flanked by G-U basepairs with a methyl group on the adenine N6

Functional Information from PDB Data
site_idAC1
Number of Residues1
Detailsbinding site for residue NA A 101
ChainResidue
ACBV2

site_idAC2
Number of Residues3
Detailsbinding site for residue NA C 101
ChainResidue
CCBV2
CC3
CHOH207

site_idAC3
Number of Residues1
Detailsbinding site for residue NA C 102
ChainResidue
CCBV2

site_idAC4
Number of Residues1
Detailsbinding site for residue NA D 101
ChainResidue
DG1

site_idAC5
Number of Residues9
Detailsbinding site for Di-nucleotide G B 1 and CBV B 2
ChainResidue
AHOH207
BC3
BC10
BHOH103
BHOH104
BHOH109
AG1
AG9
AC10

site_idAC6
Number of Residues9
Detailsbinding site for Di-nucleotide CBV B 2 and C B 3
ChainResidue
AG8
AG9
AC10
AHOH207
BG1
BG4
BHOH109
BHOH111
BHOH115

site_idAC7
Number of Residues7
Detailsbinding site for Di-nucleotide G B 5 and 6MZ B 6
ChainResidue
AG5
A6MZ6
BG4
BU7
BHOH113
CG9
CC10

site_idAC8
Number of Residues9
Detailsbinding site for Di-nucleotide G C 1 and CBV C 2
ChainResidue
CC3
CNA101
CNA102
CHOH206
CHOH207
CHOH210
DG9
DC10
DC10

site_idAC9
Number of Residues12
Detailsbinding site for Di-nucleotide CBV C 2 and C C 3
ChainResidue
BC10
CG1
CG4
CNA101
CNA102
CHOH202
CHOH205
CHOH207
CHOH211
DG8
DG9
DC10

site_idAD1
Number of Residues7
Detailsbinding site for Di-nucleotide G C 5 and 6MZ C 6
ChainResidue
CG4
CU7
CHOH208
DG5
D6MZ6
DHOH205
DHOH208

site_idAD2
Number of Residues8
Detailsbinding site for Di-nucleotide G D 1 and CBV D 2
ChainResidue
CG9
CC10
CC10
CHOH204
DC3
DNA101
DHOH207
DHOH214

site_idAD3
Number of Residues8
Detailsbinding site for Di-nucleotide CBV D 2 and C D 3
ChainResidue
AU7
CG8
CG9
CC10
DG1
DG4
DHOH207
DHOH211

site_idAD4
Number of Residues10
Detailsbinding site for Di-nucleotide G D 5 and 6MZ D 6
ChainResidue
CG5
C6MZ6
CU7
DG4
DU7
DHOH201
DHOH204
DHOH205
DHOH208
DHOH212

222415

PDB entries from 2024-07-10

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