Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

5LOO

Structure of full length unliganded CodY from Bacillus subtilis

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000166	molecular_function	nucleotide binding
A	0000976	molecular_function	transcription cis-regulatory region binding
A	0001217	molecular_function	DNA-binding transcription repressor activity
A	0003677	molecular_function	DNA binding
A	0003700	molecular_function	DNA-binding transcription factor activity
A	0005515	molecular_function	protein binding
A	0005525	molecular_function	GTP binding
A	0005737	cellular_component	cytoplasm
A	0006355	biological_process	regulation of DNA-templated transcription
A	0032993	cellular_component	protein-DNA complex
A	0045892	biological_process	negative regulation of DNA-templated transcription
B	0000166	molecular_function	nucleotide binding
B	0000976	molecular_function	transcription cis-regulatory region binding
B	0001217	molecular_function	DNA-binding transcription repressor activity
B	0003677	molecular_function	DNA binding
B	0003700	molecular_function	DNA-binding transcription factor activity
B	0005515	molecular_function	protein binding
B	0005525	molecular_function	GTP binding
B	0005737	cellular_component	cytoplasm
B	0006355	biological_process	regulation of DNA-templated transcription
B	0032993	cellular_component	protein-DNA complex
B	0045892	biological_process	negative regulation of DNA-templated transcription
C	0000166	molecular_function	nucleotide binding
C	0000976	molecular_function	transcription cis-regulatory region binding
C	0001217	molecular_function	DNA-binding transcription repressor activity
C	0003677	molecular_function	DNA binding
C	0003700	molecular_function	DNA-binding transcription factor activity
C	0005515	molecular_function	protein binding
C	0005525	molecular_function	GTP binding
C	0005737	cellular_component	cytoplasm
C	0006355	biological_process	regulation of DNA-templated transcription
C	0032993	cellular_component	protein-DNA complex
C	0045892	biological_process	negative regulation of DNA-templated transcription
D	0000166	molecular_function	nucleotide binding
D	0000976	molecular_function	transcription cis-regulatory region binding
D	0001217	molecular_function	DNA-binding transcription repressor activity
D	0003677	molecular_function	DNA binding
D	0003700	molecular_function	DNA-binding transcription factor activity
D	0005515	molecular_function	protein binding
D	0005525	molecular_function	GTP binding
D	0005737	cellular_component	cytoplasm
D	0006355	biological_process	regulation of DNA-templated transcription
D	0032993	cellular_component	protein-DNA complex
D	0045892	biological_process	negative regulation of DNA-templated transcription
E	0000166	molecular_function	nucleotide binding
E	0000976	molecular_function	transcription cis-regulatory region binding
E	0001217	molecular_function	DNA-binding transcription repressor activity
E	0003677	molecular_function	DNA binding
E	0003700	molecular_function	DNA-binding transcription factor activity
E	0005515	molecular_function	protein binding
E	0005525	molecular_function	GTP binding
E	0005737	cellular_component	cytoplasm
E	0006355	biological_process	regulation of DNA-templated transcription
E	0032993	cellular_component	protein-DNA complex
E	0045892	biological_process	negative regulation of DNA-templated transcription
F	0000166	molecular_function	nucleotide binding
F	0000976	molecular_function	transcription cis-regulatory region binding
F	0001217	molecular_function	DNA-binding transcription repressor activity
F	0003677	molecular_function	DNA binding
F	0003700	molecular_function	DNA-binding transcription factor activity
F	0005515	molecular_function	protein binding
F	0005525	molecular_function	GTP binding
F	0005737	cellular_component	cytoplasm
F	0006355	biological_process	regulation of DNA-templated transcription
F	0032993	cellular_component	protein-DNA complex
F	0045892	biological_process	negative regulation of DNA-templated transcription
G	0000166	molecular_function	nucleotide binding
G	0000976	molecular_function	transcription cis-regulatory region binding
G	0001217	molecular_function	DNA-binding transcription repressor activity
G	0003677	molecular_function	DNA binding
G	0003700	molecular_function	DNA-binding transcription factor activity
G	0005515	molecular_function	protein binding
G	0005525	molecular_function	GTP binding
G	0005737	cellular_component	cytoplasm
G	0006355	biological_process	regulation of DNA-templated transcription
G	0032993	cellular_component	protein-DNA complex
G	0045892	biological_process	negative regulation of DNA-templated transcription
H	0000166	molecular_function	nucleotide binding
H	0000976	molecular_function	transcription cis-regulatory region binding
H	0001217	molecular_function	DNA-binding transcription repressor activity
H	0003677	molecular_function	DNA binding
H	0003700	molecular_function	DNA-binding transcription factor activity
H	0005515	molecular_function	protein binding
H	0005525	molecular_function	GTP binding
H	0005737	cellular_component	cytoplasm
H	0006355	biological_process	regulation of DNA-templated transcription
H	0032993	cellular_component	protein-DNA complex
H	0045892	biological_process	negative regulation of DNA-templated transcription
I	0000166	molecular_function	nucleotide binding
I	0000976	molecular_function	transcription cis-regulatory region binding
I	0001217	molecular_function	DNA-binding transcription repressor activity
I	0003677	molecular_function	DNA binding
I	0003700	molecular_function	DNA-binding transcription factor activity
I	0005515	molecular_function	protein binding
I	0005525	molecular_function	GTP binding
I	0005737	cellular_component	cytoplasm
I	0006355	biological_process	regulation of DNA-templated transcription
I	0032993	cellular_component	protein-DNA complex
I	0045892	biological_process	negative regulation of DNA-templated transcription
J	0000166	molecular_function	nucleotide binding
J	0000976	molecular_function	transcription cis-regulatory region binding
J	0001217	molecular_function	DNA-binding transcription repressor activity
J	0003677	molecular_function	DNA binding
J	0003700	molecular_function	DNA-binding transcription factor activity
J	0005515	molecular_function	protein binding
J	0005525	molecular_function	GTP binding
J	0005737	cellular_component	cytoplasm
J	0006355	biological_process	regulation of DNA-templated transcription
J	0032993	cellular_component	protein-DNA complex
J	0045892	biological_process	negative regulation of DNA-templated transcription
K	0000166	molecular_function	nucleotide binding
K	0000976	molecular_function	transcription cis-regulatory region binding
K	0001217	molecular_function	DNA-binding transcription repressor activity
K	0003677	molecular_function	DNA binding
K	0003700	molecular_function	DNA-binding transcription factor activity
K	0005515	molecular_function	protein binding
K	0005525	molecular_function	GTP binding
K	0005737	cellular_component	cytoplasm
K	0006355	biological_process	regulation of DNA-templated transcription
K	0032993	cellular_component	protein-DNA complex
K	0045892	biological_process	negative regulation of DNA-templated transcription
L	0000166	molecular_function	nucleotide binding
L	0000976	molecular_function	transcription cis-regulatory region binding
L	0001217	molecular_function	DNA-binding transcription repressor activity
L	0003677	molecular_function	DNA binding
L	0003700	molecular_function	DNA-binding transcription factor activity
L	0005515	molecular_function	protein binding
L	0005525	molecular_function	GTP binding
L	0005737	cellular_component	cytoplasm
L	0006355	biological_process	regulation of DNA-templated transcription
L	0032993	cellular_component	protein-DNA complex
L	0045892	biological_process	negative regulation of DNA-templated transcription
M	0000166	molecular_function	nucleotide binding
M	0000976	molecular_function	transcription cis-regulatory region binding
M	0001217	molecular_function	DNA-binding transcription repressor activity
M	0003677	molecular_function	DNA binding
M	0003700	molecular_function	DNA-binding transcription factor activity
M	0005515	molecular_function	protein binding
M	0005525	molecular_function	GTP binding
M	0005737	cellular_component	cytoplasm
M	0006355	biological_process	regulation of DNA-templated transcription
M	0032993	cellular_component	protein-DNA complex
M	0045892	biological_process	negative regulation of DNA-templated transcription
N	0000166	molecular_function	nucleotide binding
N	0000976	molecular_function	transcription cis-regulatory region binding
N	0001217	molecular_function	DNA-binding transcription repressor activity
N	0003677	molecular_function	DNA binding
N	0003700	molecular_function	DNA-binding transcription factor activity
N	0005515	molecular_function	protein binding
N	0005525	molecular_function	GTP binding
N	0005737	cellular_component	cytoplasm
N	0006355	biological_process	regulation of DNA-templated transcription
N	0032993	cellular_component	protein-DNA complex
N	0045892	biological_process	negative regulation of DNA-templated transcription

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	266
Details	DNA_BIND: H-T-H motif => ECO:0000305\|PubMed:15937175

Chain	Residue	Details
A	ALA203-ARG222
J	ALA203-ARG222
K	ALA203-ARG222
L	ALA203-ARG222
M	ALA203-ARG222
N	ALA203-ARG222
B	ALA203-ARG222
C	ALA203-ARG222
D	ALA203-ARG222
E	ALA203-ARG222
F	ALA203-ARG222
G	ALA203-ARG222
H	ALA203-ARG222
I	ALA203-ARG222

site_id	SWS_FT_FI2
Number of Residues	28
Details	BINDING: BINDING => ECO:0000305\|PubMed:16488888, ECO:0007744\|PDB:2GX5

Chain	Residue	Details
A	TYR51
E	ARG69
F	TYR51
F	ARG69
G	TYR51
G	ARG69
H	TYR51
H	ARG69
I	TYR51
I	ARG69
J	TYR51
A	ARG69
J	ARG69
K	TYR51
K	ARG69
L	TYR51
L	ARG69
M	TYR51
M	ARG69
N	TYR51
N	ARG69
B	TYR51
B	ARG69
C	TYR51
C	ARG69
D	TYR51
D	ARG69
E	TYR51

site_id	SWS_FT_FI3
Number of Residues	42
Details	BINDING: BINDING => ECO:0000269\|PubMed:16488888, ECO:0007744\|PDB:2HGV

Chain	Residue	Details
A	ARG61
D	ARG61
D	PHE98
D	VAL100
E	ARG61
E	PHE98
E	VAL100
F	ARG61
F	PHE98
F	VAL100
G	ARG61
A	PHE98
G	PHE98
G	VAL100
H	ARG61
H	PHE98
H	VAL100
I	ARG61
I	PHE98
I	VAL100
J	ARG61
J	PHE98
A	VAL100
J	VAL100
K	ARG61
K	PHE98
K	VAL100
L	ARG61
L	PHE98
L	VAL100
M	ARG61
M	PHE98
M	VAL100
B	ARG61
N	ARG61
N	PHE98
N	VAL100
B	PHE98
B	VAL100
C	ARG61
C	PHE98
C	VAL100

site_id	SWS_FT_FI4
Number of Residues	14
Details	BINDING: BINDING => ECO:0000269\|PubMed:28011634, ECO:0007744\|PDB:5LOE

Chain	Residue	Details
A	THR96
J	THR96
K	THR96
L	THR96
M	THR96
N	THR96
B	THR96
C	THR96
D	THR96
E	THR96
F	THR96
G	THR96
H	THR96
I	THR96

site_id	SWS_FT_FI5
Number of Residues	14
Details	MOD_RES: Phosphoserine => ECO:0000269\|PubMed:17218307

Chain	Residue	Details
A	SER215
J	SER215
K	SER215
L	SER215
M	SER215
N	SER215
B	SER215
C	SER215
D	SER215
E	SER215
F	SER215
G	SER215
H	SER215
I	SER215

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)