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5KYV

Structure of Photinus pyralis Luciferase green shifted light emitting variant

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004497molecular_functionmonooxygenase activity
A0005524molecular_functionATP binding
A0005777cellular_componentperoxisome
A0008218biological_processbioluminescence
A0016405molecular_functionCoA-ligase activity
A0016491molecular_functionoxidoreductase activity
A0046872molecular_functionmetal ion binding
A0047077molecular_functionPhotinus-luciferin 4-monooxygenase (ATP-hydrolyzing) activity
A0051087molecular_functionprotein-folding chaperone binding
B0000166molecular_functionnucleotide binding
B0004497molecular_functionmonooxygenase activity
B0005524molecular_functionATP binding
B0005777cellular_componentperoxisome
B0008218biological_processbioluminescence
B0016405molecular_functionCoA-ligase activity
B0016491molecular_functionoxidoreductase activity
B0046872molecular_functionmetal ion binding
B0047077molecular_functionPhotinus-luciferin 4-monooxygenase (ATP-hydrolyzing) activity
B0051087molecular_functionprotein-folding chaperone binding
Functional Information from PDB Data
site_idAC1
Number of Residues18
Detailsbinding site for residue SLU A 601
ChainResidue
AHIS245
AGLY341
ALEU342
ATHR343
ASER347
AALA348
AVAL362
AASP422
AARG437
ALEU526
AALA246
APHE247
AGLY315
AGLY316
AALA317
APRO318
AGLN338
AGLY339

site_idAC2
Number of Residues5
Detailsbinding site for residue TLA A 602
ChainResidue
APRO225
AASN229
AGLN230
AHIS310
AGLU354

site_idAC3
Number of Residues19
Detailsbinding site for residue SLU B 601
ChainResidue
BHIS245
BPHE247
BTHR251
BGLY315
BGLY316
BALA317
BPRO318
BGLN338
BGLY339
BTYR340
BGLY341
BLEU342
BTHR343
BSER347
BALA348
BASP422
BARG437
BLYS529
BHOH707

Functional Information from PROSITE/UniProt
site_idPS00455
Number of Residues12
DetailsAMP_BINDING Putative AMP-binding domain signature. IMNSSGSTGlPK
ChainResidueDetails
AILE195-LYS206

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMotif: {"description":"Microbody targeting signal"}
ChainResidueDetails

Catalytic Information from CSA
site_idMCSA1
Number of Residues5
DetailsM-CSA 128
ChainResidueDetails
AARG218electrostatic stabiliser
AHIS245electrostatic stabiliser
ATHR343electrostatic stabiliser, hydrogen bond donor
ALYS443electrostatic stabiliser, hydrogen bond donor
ALYS529electrostatic stabiliser, hydrogen bond donor

site_idMCSA2
Number of Residues5
DetailsM-CSA 128
ChainResidueDetails
BARG218electrostatic stabiliser
BHIS245electrostatic stabiliser
BTHR343electrostatic stabiliser, hydrogen bond donor
BLYS443electrostatic stabiliser, hydrogen bond donor
BLYS529electrostatic stabiliser, hydrogen bond donor

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PDB entries from 2026-01-14

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