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5KPF

Crystal structure of cytochrome c - Phenyl-trisulfonatocalix[4]arene complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0005515molecular_functionprotein binding
A0005739cellular_componentmitochondrion
A0005758cellular_componentmitochondrial intermembrane space
A0006122biological_processmitochondrial electron transport, ubiquinol to cytochrome c
A0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
A0009055molecular_functionelectron transfer activity
A0020037molecular_functionheme binding
A0046872molecular_functionmetal ion binding
A1901612molecular_functioncardiolipin binding
B0005515molecular_functionprotein binding
B0005739cellular_componentmitochondrion
B0005758cellular_componentmitochondrial intermembrane space
B0006122biological_processmitochondrial electron transport, ubiquinol to cytochrome c
B0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
B0009055molecular_functionelectron transfer activity
B0020037molecular_functionheme binding
B0046872molecular_functionmetal ion binding
B1901612molecular_functioncardiolipin binding
Functional Information from PDB Data
site_idAC1
Number of Residues23
Detailsbinding site for residue HEC A 201
ChainResidue
AARG13
ATYR46
ATYR48
ATHR49
AASN52
ATRP59
AMET64
ATYR67
ATHR78
ALYS79
AMET80
ACYS14
APHE82
ALEU94
AHOH345
AHOH346
ACYS17
AHIS18
AVAL28
AGLY29
AILE35
ASER40
AGLY41

site_idAC2
Number of Residues9
Detailsbinding site for residue NO3 A 202
ChainResidue
AALA-5
AASN62
AASN63
AGLU66
AHOH332
BALA-5
BASN62
BASN63
BGLU66

site_idAC3
Number of Residues24
Detailsbinding site for residue 6VJ B 202
ChainResidue
BALA-1
BSER2
BALA3
BALA3
BLYS4
BLYS5
BHIS26
BLYS27
BVAL28
BGLY45
BTYR46
BSER47
BLYS86
BTHR96
BLYS99
BLYS100
BHOH304
BHOH311
BHOH315
BHOH320
BHOH324
BHOH326
BHOH348
BHOH363

site_idAC4
Number of Residues27
Detailsbinding site for Di-peptide HEC B 201 and CYS B 17
ChainResidue
BARG13
BCYS14
BLEU15
BGLN16
BHIS18
BLYS27
BVAL28
BGLY29
BPRO30
BILE35
BSER40
BGLY41
BTYR46
BTYR48
BTHR49
BASN52
BTRP59
BMET64
BTYR67
BLEU68
BTHR78
BLYS79
BMET80
BPHE82
BLEU94
BHOH330
BHOH334

site_idAC5
Number of Residues27
Detailsbinding site for Di-peptide HEC B 201 and CYS B 14
ChainResidue
BTRP59
BMET64
BTYR67
BLEU68
BTHR78
BLYS79
BMET80
BPHE82
BLEU94
BHOH330
BHOH334
BPHE10
BARG13
BLEU15
BGLN16
BCYS17
BHIS18
BVAL28
BGLY29
BPRO30
BILE35
BSER40
BGLY41
BTYR46
BTYR48
BTHR49
BASN52

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: covalent => ECO:0000269|PubMed:11880631, ECO:0000269|PubMed:18390544, ECO:0007744|PDB:1KYO, ECO:0007744|PDB:3CX5
ChainResidueDetails
ACYS14
ACYS17
BCYS14
BCYS17

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: axial binding residue => ECO:0000269|PubMed:11880631, ECO:0000269|PubMed:18390544, ECO:0007744|PDB:1KYO, ECO:0007744|PDB:3CX5
ChainResidueDetails
AHIS18
AMET80
BHIS18
BMET80

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: N6,N6,N6-trimethyllysine; by CTM1 => ECO:0000269|PubMed:10791961, ECO:0000269|PubMed:11880631, ECO:0007744|PDB:1KYO
ChainResidueDetails
ALYS72
BLYS72

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: N6,N6,N6-trimethyllysine => ECO:0000269|PubMed:10821864, ECO:0000269|PubMed:18390544
ChainResidueDetails
ALYS73
BLYS73

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PDB entries from 2024-10-30

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