5KPF
Crystal structure of cytochrome c - Phenyl-trisulfonatocalix[4]arene complex
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005515 | molecular_function | protein binding |
A | 0005739 | cellular_component | mitochondrion |
A | 0005758 | cellular_component | mitochondrial intermembrane space |
A | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
A | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
A | 0009055 | molecular_function | electron transfer activity |
A | 0020037 | molecular_function | heme binding |
A | 0046872 | molecular_function | metal ion binding |
A | 1901612 | molecular_function | cardiolipin binding |
B | 0005515 | molecular_function | protein binding |
B | 0005739 | cellular_component | mitochondrion |
B | 0005758 | cellular_component | mitochondrial intermembrane space |
B | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
B | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
B | 0009055 | molecular_function | electron transfer activity |
B | 0020037 | molecular_function | heme binding |
B | 0046872 | molecular_function | metal ion binding |
B | 1901612 | molecular_function | cardiolipin binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 23 |
Details | binding site for residue HEC A 201 |
Chain | Residue |
A | ARG13 |
A | TYR46 |
A | TYR48 |
A | THR49 |
A | ASN52 |
A | TRP59 |
A | MET64 |
A | TYR67 |
A | THR78 |
A | LYS79 |
A | MET80 |
A | CYS14 |
A | PHE82 |
A | LEU94 |
A | HOH345 |
A | HOH346 |
A | CYS17 |
A | HIS18 |
A | VAL28 |
A | GLY29 |
A | ILE35 |
A | SER40 |
A | GLY41 |
site_id | AC2 |
Number of Residues | 9 |
Details | binding site for residue NO3 A 202 |
Chain | Residue |
A | ALA-5 |
A | ASN62 |
A | ASN63 |
A | GLU66 |
A | HOH332 |
B | ALA-5 |
B | ASN62 |
B | ASN63 |
B | GLU66 |
site_id | AC3 |
Number of Residues | 24 |
Details | binding site for residue 6VJ B 202 |
Chain | Residue |
B | ALA-1 |
B | SER2 |
B | ALA3 |
B | ALA3 |
B | LYS4 |
B | LYS5 |
B | HIS26 |
B | LYS27 |
B | VAL28 |
B | GLY45 |
B | TYR46 |
B | SER47 |
B | LYS86 |
B | THR96 |
B | LYS99 |
B | LYS100 |
B | HOH304 |
B | HOH311 |
B | HOH315 |
B | HOH320 |
B | HOH324 |
B | HOH326 |
B | HOH348 |
B | HOH363 |
site_id | AC4 |
Number of Residues | 27 |
Details | binding site for Di-peptide HEC B 201 and CYS B 17 |
Chain | Residue |
B | ARG13 |
B | CYS14 |
B | LEU15 |
B | GLN16 |
B | HIS18 |
B | LYS27 |
B | VAL28 |
B | GLY29 |
B | PRO30 |
B | ILE35 |
B | SER40 |
B | GLY41 |
B | TYR46 |
B | TYR48 |
B | THR49 |
B | ASN52 |
B | TRP59 |
B | MET64 |
B | TYR67 |
B | LEU68 |
B | THR78 |
B | LYS79 |
B | MET80 |
B | PHE82 |
B | LEU94 |
B | HOH330 |
B | HOH334 |
site_id | AC5 |
Number of Residues | 27 |
Details | binding site for Di-peptide HEC B 201 and CYS B 14 |
Chain | Residue |
B | TRP59 |
B | MET64 |
B | TYR67 |
B | LEU68 |
B | THR78 |
B | LYS79 |
B | MET80 |
B | PHE82 |
B | LEU94 |
B | HOH330 |
B | HOH334 |
B | PHE10 |
B | ARG13 |
B | LEU15 |
B | GLN16 |
B | CYS17 |
B | HIS18 |
B | VAL28 |
B | GLY29 |
B | PRO30 |
B | ILE35 |
B | SER40 |
B | GLY41 |
B | TYR46 |
B | TYR48 |
B | THR49 |
B | ASN52 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | BINDING: covalent => ECO:0000269|PubMed:11880631, ECO:0000269|PubMed:18390544, ECO:0007744|PDB:1KYO, ECO:0007744|PDB:3CX5 |
Chain | Residue | Details |
A | CYS14 | |
A | CYS17 | |
B | CYS14 | |
B | CYS17 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | BINDING: axial binding residue => ECO:0000269|PubMed:11880631, ECO:0000269|PubMed:18390544, ECO:0007744|PDB:1KYO, ECO:0007744|PDB:3CX5 |
Chain | Residue | Details |
A | HIS18 | |
A | MET80 | |
B | HIS18 | |
B | MET80 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | MOD_RES: N6,N6,N6-trimethyllysine; by CTM1 => ECO:0000269|PubMed:10791961, ECO:0000269|PubMed:11880631, ECO:0007744|PDB:1KYO |
Chain | Residue | Details |
A | LYS72 | |
B | LYS72 |
site_id | SWS_FT_FI4 |
Number of Residues | 2 |
Details | MOD_RES: N6,N6,N6-trimethyllysine => ECO:0000269|PubMed:10821864, ECO:0000269|PubMed:18390544 |
Chain | Residue | Details |
A | LYS73 | |
B | LYS73 |