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5KJI

Crystal structure of an active polycomb repressive complex 2 in the basal state

Replaces:  5CH2
Functional Information from GO Data
ChainGOidnamespacecontents
A0000122biological_processnegative regulation of transcription by RNA polymerase II
A0005634cellular_componentnucleus
A0006325biological_processchromatin organization
A0031491molecular_functionnucleosome binding
B0006338biological_processchromatin remodeling
B0042054molecular_functionhistone methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN B 8001
ChainResidue
BCYS727
BCYS748
BCYS755
BCYS760

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN B 8002
ChainResidue
BCYS736
BCYS755
BCYS763
BCYS784

site_idAC3
Number of Residues4
Detailsbinding site for residue ZN B 8003
ChainResidue
BCYS729
BCYS736
BCYS746
BCYS727

site_idAC4
Number of Residues4
Detailsbinding site for residue ZN B 8004
ChainResidue
BCYS685
BHIS687
BCYS691
BCYS697

site_idAC5
Number of Residues4
Detailsbinding site for residue ZN B 8005
ChainResidue
BCYS691
BCYS709
BCYS715
BCYS720

site_idAC6
Number of Residues4
Detailsbinding site for residue ZN B 8006
ChainResidue
BCYS685
BCYS699
BCYS709
BCYS713

site_idAC7
Number of Residues4
Detailsbinding site for residue ZN B 8007
ChainResidue
BCYS508
BCYS511
BCYS516
BHIS518

site_idAC8
Number of Residues4
Detailsbinding site for residue ZN B 8008
ChainResidue
BCYS570
BCYS574
BCYS615
BCYS625

site_idAC9
Number of Residues16
Detailsbinding site for residue SAH B 8009
ChainResidue
BCYS807
BGLY808
BTYR809
BLYS852
BVAL853
BSER854
BTYR855
BARG877
BTYR878
BASN880
BHIS881
BTYR918
BLEU925
BLYS927
BARG2536
BHOH8109

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues23
DetailsBINDING: BINDING => ECO:0000269|PubMed:26472914, ECO:0000269|PubMed:28607149, ECO:0000269|PubMed:29904056, ECO:0007744|PDB:5BJS, ECO:0007744|PDB:5KJH, ECO:0007744|PDB:5KJI, ECO:0007744|PDB:5KKL, ECO:0007744|PDB:5M5G, ECO:0007744|PDB:5TQR, ECO:0007744|PDB:5VK3, ECO:0007744|PDB:5WF7, ECO:0007744|PDB:5WFC, ECO:0007744|PDB:5WFD
ChainResidueDetails
BCYS508
BCYS691
BCYS697
BCYS699
BCYS709
BCYS713
BCYS715
BCYS720
BCYS727
BCYS729
BCYS736
BCYS511
BCYS746
BCYS748
BCYS755
BCYS760
BCYS516
BHIS518
BCYS574
BCYS615
BCYS625
BCYS685
BHIS687

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:26472914, ECO:0000269|PubMed:28607149, ECO:0000269|PubMed:29904056, ECO:0007744|PDB:5BJS, ECO:0007744|PDB:5KJH, ECO:0007744|PDB:5KJI, ECO:0007744|PDB:5M5G, ECO:0007744|PDB:5TQR, ECO:0007744|PDB:5VK3, ECO:0007744|PDB:5WF7, ECO:0007744|PDB:5WFC, ECO:0007744|PDB:5WFD
ChainResidueDetails
BCYS570
BCYS763

site_idSWS_FT_FI3
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:26472914, ECO:0000269|PubMed:28607149, ECO:0000269|PubMed:29904056, ECO:0007744|PDB:5BJS, ECO:0007744|PDB:5KJH, ECO:0007744|PDB:5KJI, ECO:0007744|PDB:5KKL, ECO:0007744|PDB:5M5G, ECO:0007744|PDB:5TQR, ECO:0007744|PDB:5VK3, ECO:0007744|PDB:5WF7, ECO:0007744|PDB:5WFC
ChainResidueDetails
BCYS784

site_idSWS_FT_FI4
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:26472914, ECO:0000269|PubMed:28607149, ECO:0007744|PDB:5KKL, ECO:0007744|PDB:5TQR
ChainResidueDetails
BTYR809
BSER854
BTYR855
BHIS881

site_idSWS_FT_FI5
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:26472914, ECO:0000269|PubMed:28607149, ECO:0007744|PDB:5TQR
ChainResidueDetails
BLYS852

site_idSWS_FT_FI6
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:26472914, ECO:0007744|PDB:5KKL
ChainResidueDetails
BASN880
BTHR926

site_idSWS_FT_FI7
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:26472914, ECO:0007744|PDB:5KJH, ECO:0007744|PDB:5KJI, ECO:0007744|PDB:5M5G
ChainResidueDetails
BLYS927

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PDB entries from 2024-10-16

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