5KGD

Crystal structure of PIM1 with inhibitor: 2-pyridin-3-yl-1~{H}-benzimidazole

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0004672	molecular_function	protein kinase activity
A	0004674	molecular_function	protein serine/threonine kinase activity
A	0005524	molecular_function	ATP binding
A	0006468	biological_process	protein phosphorylation
A	0043066	biological_process	negative regulation of apoptotic process

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	binding site for residue EDO A 401

Chain	Residue
A	ILE133
A	ASP170
A	ASP234
A	GLY238

---

site_id	AC2
Number of Residues	6
Details	binding site for residue EDO A 402

Chain	Residue
A	6SL420
A	GLU89
A	LEU93
A	ILE185
A	ASP186
A	PHE187

---

site_id	AC3
Number of Residues	6
Details	binding site for residue EDO A 403

Chain	Residue
A	ARG136
A	ALA138
A	LEU139
A	GLN140
A	LEU143
A	HOH521

---

site_id	AC4
Number of Residues	7
Details	binding site for residue EDO A 404

Chain	Residue
A	ARG221
A	SER222
A	VAL225
A	ARG278
A	PRO279
A	HOH514
A	HOH559

---

site_id	AC5
Number of Residues	5
Details	binding site for residue EDO A 405

Chain	Residue
A	PHE100
A	GLU153
A	ASN160
A	GLN264
A	ARG268

---

site_id	AC6
Number of Residues	4
Details	binding site for residue EDO A 406

Chain	Residue
A	GLU35
A	VAL40
A	HIS68
A	HOH535

---

site_id	AC7
Number of Residues	4
Details	binding site for residue EDO A 407

Chain	Residue
A	ASP114
A	LEU193
A	EDO419
A	HOH563

---

site_id	AC8
Number of Residues	4
Details	binding site for residue EDO A 408

Chain	Residue
A	ASP170
A	GLU171
A	TYR207
A	ILE240

---

site_id	AC9
Number of Residues	4
Details	binding site for residue EDO A 409

Chain	Residue
A	GLU181
A	GLN252
A	VAL253
A	PHE254

---

site_id	AD1
Number of Residues	4
Details	binding site for residue EDO A 410

Chain	Residue
A	LYS169
A	GLU171
A	THR204
A	HOH532

---

site_id	AD2
Number of Residues	4
Details	binding site for residue EDO A 411

Chain	Residue
A	GLY99
A	ARG250
A	GLY251
A	GLN252

---

site_id	AD3
Number of Residues	5
Details	binding site for residue EDO A 412

Chain	Residue
A	GLU262
A	HIS265
A	HIS287
A	PRO288
A	EDO416

---

site_id	AD4
Number of Residues	3
Details	binding site for residue EDO A 413

Chain	Residue
A	GLU142
A	ARG145
A	HOH520

---

site_id	AD5
Number of Residues	6
Details	binding site for residue EDO A 414

Chain	Residue
A	LEU43
A	HIS219
A	ARG221
A	SER222
A	PRO275
A	EDO418

---

site_id	AD6
Number of Residues	1
Details	binding site for residue EDO A 415

Chain	Residue
A	LEU177

---

site_id	AD7
Number of Residues	7
Details	binding site for residue EDO A 416

Chain	Residue
A	TRP269
A	GLU283
A	ASN286
A	HIS287
A	PRO288
A	EDO412
A	HOH543

---

site_id	AD8
Number of Residues	3
Details	binding site for residue EDO A 417

Chain	Residue
A	HIS265
A	TRP269
A	HOH561

---

site_id	AD9
Number of Residues	7
Details	binding site for residue EDO A 418

Chain	Residue
A	TYR53
A	LEU193
A	LYS194
A	GLY220
A	ARG221
A	EDO414
A	HOH542

---

site_id	AE1
Number of Residues	2
Details	binding site for residue EDO A 419

Chain	Residue
A	EDO407
A	HOH529

---

site_id	AE2
Number of Residues	9
Details	binding site for residue 6SL A 420

Chain	Residue
A	PHE49
A	ALA65
A	LYS67
A	GLU121
A	LEU174
A	ILE185
A	ASP186
A	EDO402
A	HOH570

---

site_id	AE3
Number of Residues	7
Details	binding site for residue SO4 A 421

Chain	Residue
A	HOH501
A	HOH537
A	HOH557
A	ARG156
A	ARG258
A	SER261
A	PHE281

---

site_id	AE4
Number of Residues	3
Details	binding site for residue SO4 A 422

Chain	Residue
A	ASP108
A	TRP109
A	HOH524

---

Functional Information from PROSITE/UniProt

site_id	PS00107
Number of Residues	24
Details	PROTEIN_KINASE_ATP Protein kinases ATP-binding region signature. LGSGGFGSVYsGirvsdnlp..........VAIK

Chain	Residue	Details
A	LEU44-LYS67

---

site_id	PS00108
Number of Residues	13
Details	PROTEIN_KINASE_ST Serine/Threonine protein kinases active-site signature. VlHrDIKdeNILI

Chain	Residue	Details
A	VAL163-ILE175

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	252
Details	Domain: {"description":"Protein kinase","evidences":[{"source":"PROSITE-ProRule","id":"PRU00159","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	1
Details	Active site: {"description":"Proton acceptor","evidences":[{"source":"PROSITE-ProRule","id":"PRU00159","evidenceCode":"ECO:0000255"},{"source":"PROSITE-ProRule","id":"PRU10027","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	8
Details	Binding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00159","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	3
Details	Binding site: {"evidences":[{"source":"PubMed","id":"15525646","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"15657054","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"15808862","evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	2
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"15657054","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---