5KF0
Crystal structure of an Aldedhyde dehydrogenase from Burkholderia vietnamiensis
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000166 | molecular_function | nucleotide binding |
A | 0008911 | molecular_function | lactaldehyde dehydrogenase (NAD+) activity |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
A | 0046872 | molecular_function | metal ion binding |
B | 0000166 | molecular_function | nucleotide binding |
B | 0008911 | molecular_function | lactaldehyde dehydrogenase (NAD+) activity |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
B | 0046872 | molecular_function | metal ion binding |
C | 0000166 | molecular_function | nucleotide binding |
C | 0008911 | molecular_function | lactaldehyde dehydrogenase (NAD+) activity |
C | 0016491 | molecular_function | oxidoreductase activity |
C | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
C | 0046872 | molecular_function | metal ion binding |
D | 0000166 | molecular_function | nucleotide binding |
D | 0008911 | molecular_function | lactaldehyde dehydrogenase (NAD+) activity |
D | 0016491 | molecular_function | oxidoreductase activity |
D | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
D | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 36 |
Details | binding site for residue NDP A 501 |
Chain | Residue |
A | ILE150 |
A | ARG181 |
A | ALA208 |
A | ARG210 |
A | ALA213 |
A | PHE227 |
A | THR228 |
A | GLY229 |
A | SER230 |
A | PRO231 |
A | VAL233 |
A | SER151 |
A | GLU249 |
A | LEU250 |
A | GLY251 |
A | CYS285 |
A | GLU379 |
A | PHE381 |
A | TYR446 |
A | HOH616 |
A | HOH665 |
A | HOH682 |
A | PRO152 |
A | HOH692 |
A | HOH717 |
A | HOH776 |
A | HOH783 |
A | HOH791 |
A | HOH891 |
A | HOH945 |
A | PHE153 |
A | ASN154 |
A | LEU159 |
A | LYS177 |
A | ALA179 |
A | SER180 |
site_id | AC2 |
Number of Residues | 4 |
Details | binding site for residue MG A 502 |
Chain | Residue |
A | HIS-2 |
A | HIS0 |
A | GLU85 |
B | GLU13 |
site_id | AC3 |
Number of Residues | 4 |
Details | binding site for residue MRD A 503 |
Chain | Residue |
A | ALA67 |
A | GLU195 |
A | THR196 |
A | ASN197 |
site_id | AC4 |
Number of Residues | 7 |
Details | binding site for residue ACT A 504 |
Chain | Residue |
A | ARG104 |
A | PHE155 |
A | CYS285 |
A | ILE286 |
A | ARG440 |
A | TYR446 |
A | HOH610 |
site_id | AC5 |
Number of Residues | 4 |
Details | binding site for residue MPD A 505 |
Chain | Residue |
A | ASP271 |
A | PHE275 |
A | LYS308 |
A | HOH881 |
site_id | AC6 |
Number of Residues | 4 |
Details | binding site for residue MPD A 506 |
Chain | Residue |
A | LYS450 |
A | ASP451 |
A | HOH650 |
B | GLU220 |
site_id | AC7 |
Number of Residues | 8 |
Details | binding site for residue MPD A 507 |
Chain | Residue |
A | ILE119 |
A | ARG140 |
A | HOH688 |
A | HOH718 |
A | HOH850 |
B | TRP423 |
D | ASN125 |
D | THR136 |
site_id | AC8 |
Number of Residues | 37 |
Details | binding site for residue NDP B 501 |
Chain | Residue |
B | HOH775 |
B | HOH796 |
B | HOH808 |
B | HOH820 |
B | HOH975 |
B | ILE150 |
B | SER151 |
B | PRO152 |
B | PHE153 |
B | ASN154 |
B | LEU159 |
B | LYS177 |
B | PRO178 |
B | ALA179 |
B | SER180 |
B | ARG181 |
B | ALA208 |
B | ARG210 |
B | ALA213 |
B | PHE227 |
B | THR228 |
B | GLY229 |
B | SER230 |
B | PRO231 |
B | VAL233 |
B | GLU249 |
B | LEU250 |
B | GLY251 |
B | CYS285 |
B | GLU379 |
B | PHE381 |
B | TYR446 |
B | HOH661 |
B | HOH695 |
B | HOH698 |
B | HOH706 |
B | HOH715 |
site_id | AC9 |
Number of Residues | 7 |
Details | binding site for residue ACT B 502 |
Chain | Residue |
B | ARG64 |
B | VAL68 |
B | ASN197 |
B | LEU198 |
B | MRD503 |
B | HOH647 |
B | HOH869 |
site_id | AD1 |
Number of Residues | 6 |
Details | binding site for residue MRD B 503 |
Chain | Residue |
B | ARG64 |
B | ALA67 |
B | GLU195 |
B | THR196 |
B | ASN197 |
B | ACT502 |
site_id | AD2 |
Number of Residues | 9 |
Details | binding site for residue MPD B 504 |
Chain | Residue |
B | VAL123 |
B | ASN125 |
B | THR136 |
B | HOH709 |
C | ILE119 |
C | ARG140 |
C | HOH913 |
D | TRP423 |
D | HOH819 |
site_id | AD3 |
Number of Residues | 7 |
Details | binding site for residue ACT B 505 |
Chain | Residue |
B | ARG104 |
B | PHE155 |
B | CYS285 |
B | ARG440 |
B | TYR446 |
B | HOH610 |
B | HOH682 |
site_id | AD4 |
Number of Residues | 4 |
Details | binding site for residue MPD B 506 |
Chain | Residue |
B | ASP271 |
B | PHE275 |
B | LYS308 |
B | PHE323 |
site_id | AD5 |
Number of Residues | 5 |
Details | binding site for residue MPD B 507 |
Chain | Residue |
A | GLU220 |
A | LYS243 |
B | LYS450 |
B | ASP451 |
B | HOH686 |
site_id | AD6 |
Number of Residues | 2 |
Details | binding site for residue MPD B 508 |
Chain | Residue |
D | PHE263 |
D | LEU297 |
site_id | AD7 |
Number of Residues | 5 |
Details | binding site for residue MPD B 509 |
Chain | Residue |
A | TRP423 |
B | ARG140 |
B | HOH636 |
B | HOH654 |
C | THR136 |
site_id | AD8 |
Number of Residues | 36 |
Details | binding site for residue NDP C 501 |
Chain | Residue |
C | ILE150 |
C | SER151 |
C | PRO152 |
C | PHE153 |
C | ASN154 |
C | LEU159 |
C | LYS177 |
C | ALA179 |
C | SER180 |
C | ARG181 |
C | ALA208 |
C | ARG210 |
C | ALA213 |
C | PHE227 |
C | THR228 |
C | GLY229 |
C | SER230 |
C | PRO231 |
C | VAL233 |
C | GLU249 |
C | LEU250 |
C | GLY251 |
C | CYS285 |
C | GLU379 |
C | PHE381 |
C | TYR446 |
C | HOH654 |
C | HOH663 |
C | HOH665 |
C | HOH674 |
C | HOH718 |
C | HOH735 |
C | HOH793 |
C | HOH883 |
C | HOH890 |
C | HOH907 |
site_id | AD9 |
Number of Residues | 7 |
Details | binding site for residue ACT C 502 |
Chain | Residue |
C | ARG64 |
C | VAL68 |
C | ASN197 |
C | LEU198 |
C | MRD503 |
C | HOH672 |
C | HOH689 |
site_id | AE1 |
Number of Residues | 6 |
Details | binding site for residue MRD C 503 |
Chain | Residue |
C | ARG64 |
C | ALA67 |
C | GLU195 |
C | THR196 |
C | ASN197 |
C | ACT502 |
site_id | AE2 |
Number of Residues | 6 |
Details | binding site for residue ACT C 504 |
Chain | Residue |
C | ARG104 |
C | CYS285 |
C | ILE286 |
C | ARG440 |
C | TYR446 |
C | HOH601 |
site_id | AE3 |
Number of Residues | 3 |
Details | binding site for residue MPD C 505 |
Chain | Residue |
C | ASP271 |
C | PHE275 |
C | LYS308 |
site_id | AE4 |
Number of Residues | 5 |
Details | binding site for residue MPD C 506 |
Chain | Residue |
C | LYS450 |
C | ASP451 |
C | HOH628 |
D | GLU220 |
D | ARG223 |
site_id | AE5 |
Number of Residues | 6 |
Details | binding site for residue MPD D 501 |
Chain | Residue |
A | THR136 |
C | TRP423 |
D | ILE119 |
D | ARG140 |
D | HOH626 |
D | HOH666 |
site_id | AE6 |
Number of Residues | 7 |
Details | binding site for residue MPD D 502 |
Chain | Residue |
A | TYR138 |
A | MET472 |
B | ALA419 |
B | GLN420 |
C | GLN420 |
D | TYR138 |
D | MET472 |
site_id | AE7 |
Number of Residues | 36 |
Details | binding site for residue NDP D 503 |
Chain | Residue |
D | ILE150 |
D | SER151 |
D | PRO152 |
D | PHE153 |
D | ASN154 |
D | LEU159 |
D | LYS177 |
D | PRO178 |
D | ALA179 |
D | SER180 |
D | ARG181 |
D | ALA208 |
D | ARG210 |
D | ALA213 |
D | PHE227 |
D | THR228 |
D | GLY229 |
D | SER230 |
D | PRO231 |
D | VAL233 |
D | GLU249 |
D | LEU250 |
D | GLY251 |
D | CYS285 |
D | GLU379 |
D | PHE381 |
D | TYR446 |
D | HOH660 |
D | HOH668 |
D | HOH675 |
D | HOH686 |
D | HOH694 |
D | HOH711 |
D | HOH760 |
D | HOH799 |
D | HOH912 |
site_id | AE8 |
Number of Residues | 6 |
Details | binding site for residue ACT D 504 |
Chain | Residue |
D | ARG64 |
D | VAL68 |
D | ASN197 |
D | LEU198 |
D | MRD505 |
D | HOH617 |
site_id | AE9 |
Number of Residues | 5 |
Details | binding site for residue MRD D 505 |
Chain | Residue |
D | ALA67 |
D | GLU195 |
D | THR196 |
D | ASN197 |
D | ACT504 |
site_id | AF1 |
Number of Residues | 6 |
Details | binding site for residue ACT D 506 |
Chain | Residue |
D | ARG104 |
D | CYS285 |
D | ARG440 |
D | TYR446 |
D | HOH602 |
D | HOH621 |
site_id | AF2 |
Number of Residues | 3 |
Details | binding site for residue MPD D 507 |
Chain | Residue |
D | ASP271 |
D | PHE275 |
D | LYS308 |
site_id | AF3 |
Number of Residues | 6 |
Details | binding site for residue MRD D 508 |
Chain | Residue |
C | GLU220 |
C | ARG223 |
C | LYS243 |
D | LYS450 |
D | ASP451 |
D | HOH671 |
Functional Information from PROSITE/UniProt
site_id | PS00687 |
Number of Residues | 8 |
Details | ALDEHYDE_DEHYDR_GLU Aldehyde dehydrogenases glutamic acid active site. LELGGNAA |
Chain | Residue | Details |
A | LEU248-ALA255 |