Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

5KC1

Structure of the C-terminal dimerization domain of Atg38

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000407	cellular_component	phagophore assembly site
A	0005198	molecular_function	structural molecule activity
A	0005515	molecular_function	protein binding
A	0005737	cellular_component	cytoplasm
A	0005774	cellular_component	vacuolar membrane
A	0006914	biological_process	autophagy
A	0016236	biological_process	macroautophagy
A	0034045	cellular_component	phagophore assembly site membrane
A	0034271	cellular_component	phosphatidylinositol 3-kinase complex, class III, type I
A	0042802	molecular_function	identical protein binding
A	0046854	biological_process	phosphatidylinositol phosphate biosynthetic process
B	0000407	cellular_component	phagophore assembly site
B	0005198	molecular_function	structural molecule activity
B	0005515	molecular_function	protein binding
B	0005737	cellular_component	cytoplasm
B	0005774	cellular_component	vacuolar membrane
B	0006914	biological_process	autophagy
B	0016236	biological_process	macroautophagy
B	0034045	cellular_component	phagophore assembly site membrane
B	0034271	cellular_component	phosphatidylinositol 3-kinase complex, class III, type I
B	0042802	molecular_function	identical protein binding
B	0046854	biological_process	phosphatidylinositol phosphate biosynthetic process
C	0000407	cellular_component	phagophore assembly site
C	0005198	molecular_function	structural molecule activity
C	0005515	molecular_function	protein binding
C	0005737	cellular_component	cytoplasm
C	0005774	cellular_component	vacuolar membrane
C	0006914	biological_process	autophagy
C	0016236	biological_process	macroautophagy
C	0034045	cellular_component	phagophore assembly site membrane
C	0034271	cellular_component	phosphatidylinositol 3-kinase complex, class III, type I
C	0042802	molecular_function	identical protein binding
C	0046854	biological_process	phosphatidylinositol phosphate biosynthetic process
D	0000407	cellular_component	phagophore assembly site
D	0005198	molecular_function	structural molecule activity
D	0005515	molecular_function	protein binding
D	0005737	cellular_component	cytoplasm
D	0005774	cellular_component	vacuolar membrane
D	0006914	biological_process	autophagy
D	0016236	biological_process	macroautophagy
D	0034045	cellular_component	phagophore assembly site membrane
D	0034271	cellular_component	phosphatidylinositol 3-kinase complex, class III, type I
D	0042802	molecular_function	identical protein binding
D	0046854	biological_process	phosphatidylinositol phosphate biosynthetic process
E	0000407	cellular_component	phagophore assembly site
E	0005198	molecular_function	structural molecule activity
E	0005515	molecular_function	protein binding
E	0005737	cellular_component	cytoplasm
E	0005774	cellular_component	vacuolar membrane
E	0006914	biological_process	autophagy
E	0016236	biological_process	macroautophagy
E	0034045	cellular_component	phagophore assembly site membrane
E	0034271	cellular_component	phosphatidylinositol 3-kinase complex, class III, type I
E	0042802	molecular_function	identical protein binding
E	0046854	biological_process	phosphatidylinositol phosphate biosynthetic process
F	0000407	cellular_component	phagophore assembly site
F	0005198	molecular_function	structural molecule activity
F	0005515	molecular_function	protein binding
F	0005737	cellular_component	cytoplasm
F	0005774	cellular_component	vacuolar membrane
F	0006914	biological_process	autophagy
F	0016236	biological_process	macroautophagy
F	0034045	cellular_component	phagophore assembly site membrane
F	0034271	cellular_component	phosphatidylinositol 3-kinase complex, class III, type I
F	0042802	molecular_function	identical protein binding
F	0046854	biological_process	phosphatidylinositol phosphate biosynthetic process
G	0000407	cellular_component	phagophore assembly site
G	0005198	molecular_function	structural molecule activity
G	0005515	molecular_function	protein binding
G	0005737	cellular_component	cytoplasm
G	0005774	cellular_component	vacuolar membrane
G	0006914	biological_process	autophagy
G	0016236	biological_process	macroautophagy
G	0034045	cellular_component	phagophore assembly site membrane
G	0034271	cellular_component	phosphatidylinositol 3-kinase complex, class III, type I
G	0042802	molecular_function	identical protein binding
G	0046854	biological_process	phosphatidylinositol phosphate biosynthetic process
H	0000407	cellular_component	phagophore assembly site
H	0005198	molecular_function	structural molecule activity
H	0005515	molecular_function	protein binding
H	0005737	cellular_component	cytoplasm
H	0005774	cellular_component	vacuolar membrane
H	0006914	biological_process	autophagy
H	0016236	biological_process	macroautophagy
H	0034045	cellular_component	phagophore assembly site membrane
H	0034271	cellular_component	phosphatidylinositol 3-kinase complex, class III, type I
H	0042802	molecular_function	identical protein binding
H	0046854	biological_process	phosphatidylinositol phosphate biosynthetic process
I	0000407	cellular_component	phagophore assembly site
I	0005198	molecular_function	structural molecule activity
I	0005515	molecular_function	protein binding
I	0005737	cellular_component	cytoplasm
I	0005774	cellular_component	vacuolar membrane
I	0006914	biological_process	autophagy
I	0016236	biological_process	macroautophagy
I	0034045	cellular_component	phagophore assembly site membrane
I	0034271	cellular_component	phosphatidylinositol 3-kinase complex, class III, type I
I	0042802	molecular_function	identical protein binding
I	0046854	biological_process	phosphatidylinositol phosphate biosynthetic process
J	0000407	cellular_component	phagophore assembly site
J	0005198	molecular_function	structural molecule activity
J	0005515	molecular_function	protein binding
J	0005737	cellular_component	cytoplasm
J	0005774	cellular_component	vacuolar membrane
J	0006914	biological_process	autophagy
J	0016236	biological_process	macroautophagy
J	0034045	cellular_component	phagophore assembly site membrane
J	0034271	cellular_component	phosphatidylinositol 3-kinase complex, class III, type I
J	0042802	molecular_function	identical protein binding
J	0046854	biological_process	phosphatidylinositol phosphate biosynthetic process
K	0000407	cellular_component	phagophore assembly site
K	0005198	molecular_function	structural molecule activity
K	0005515	molecular_function	protein binding
K	0005737	cellular_component	cytoplasm
K	0005774	cellular_component	vacuolar membrane
K	0006914	biological_process	autophagy
K	0016236	biological_process	macroautophagy
K	0034045	cellular_component	phagophore assembly site membrane
K	0034271	cellular_component	phosphatidylinositol 3-kinase complex, class III, type I
K	0042802	molecular_function	identical protein binding
K	0046854	biological_process	phosphatidylinositol phosphate biosynthetic process
L	0000407	cellular_component	phagophore assembly site
L	0005198	molecular_function	structural molecule activity
L	0005515	molecular_function	protein binding
L	0005737	cellular_component	cytoplasm
L	0005774	cellular_component	vacuolar membrane
L	0006914	biological_process	autophagy
L	0016236	biological_process	macroautophagy
L	0034045	cellular_component	phagophore assembly site membrane
L	0034271	cellular_component	phosphatidylinositol 3-kinase complex, class III, type I
L	0042802	molecular_function	identical protein binding
L	0046854	biological_process	phosphatidylinositol phosphate biosynthetic process

Functional Information from PDB Data

site_id	AC1
Number of Residues	2
Details	binding site for residue NA C 301

Chain	Residue
C	LEU138
C	ASN141

site_id	AC2
Number of Residues	6
Details	binding site for residue NO3 C 302

Chain	Residue
C	LEU130
C	SER133
C	ILE134
C	ARG137
G	ASN144
G	NO3302

site_id	AC3
Number of Residues	2
Details	binding site for residue EDO C 303

Chain	Residue
I	ASN143
C	MET132

site_id	AC4
Number of Residues	7
Details	binding site for residue EDO C 304

Chain	Residue
B	LYS171
B	NA301
C	MET132
C	ASN136
I	ASN136
I	PHE140
I	NA301

site_id	AC5
Number of Residues	2
Details	binding site for residue NA D 301

Chain	Residue
D	GLU168
H	LEU165

site_id	AC6
Number of Residues	2
Details	binding site for residue NA D 302

Chain	Residue
D	LYS162
F	LEU165

site_id	AC7
Number of Residues	7
Details	binding site for residue NO3 D 303

Chain	Residue
D	MET161
D	LYS162
D	ILE163
D	ASN164
D	LEU165
H	GLN169
H	LYS172

site_id	AC8
Number of Residues	7
Details	binding site for residue NO3 D 304

Chain	Residue
D	ARG166
G	ARG137
G	LEU138
G	ASN141
H	ARG166
H	PHE170
H	GLU173

site_id	AC9
Number of Residues	3
Details	binding site for residue CL D 305

Chain	Residue
D	GLN169
G	LYS149
H	NO3301

site_id	AD1
Number of Residues	2
Details	binding site for residue CL D 306

Chain	Residue
D	LYS172
D	LEU176

site_id	AD2
Number of Residues	4
Details	binding site for residue NA F 301

Chain	Residue
A	ASN136
A	NO3302
F	GLN169
F	GLU173

site_id	AD3
Number of Residues	5
Details	binding site for residue NO3 A 301

Chain	Residue
A	GLN139
A	PHE140
A	ASN143
A	HOH409
F	GLN169

site_id	AD4
Number of Residues	6
Details	binding site for residue NO3 A 302

Chain	Residue
A	MET132
A	ASN136
A	GLN139
F	NA301
D	LYS171
F	GLN169

site_id	AD5
Number of Residues	4
Details	binding site for residue EDO A 303

Chain	Residue
A	ASN127
F	LEU176
F	GLN179
G	ILE126

site_id	AD6
Number of Residues	3
Details	binding site for residue EDO A 304

Chain	Residue
A	GLN147
D	LYS162
F	LYS162

site_id	AD7
Number of Residues	3
Details	binding site for residue NA B 301

Chain	Residue
B	GLU168
B	LYS171
C	EDO304

site_id	AD8
Number of Residues	6
Details	binding site for residue NO3 B 302

Chain	Residue
A	ARG137
B	ARG166
B	PHE170
B	GLU173
B	HOH401
K	ASN136

site_id	AD9
Number of Residues	6
Details	binding site for residue NO3 G 301

Chain	Residue
C	ASN144
G	LEU130
G	SER133
G	ILE134
G	ARG137
J	LYS180

site_id	AE1
Number of Residues	7
Details	binding site for residue NO3 G 302

Chain	Residue
C	SER133
C	ASN136
C	ARG137
C	NO3302
G	PHE140
G	HOH401
I	ARG137

site_id	AE2
Number of Residues	6
Details	binding site for residue NO3 G 303

Chain	Residue
G	PHE140
G	ASN144
G	GLN147
G	HOH402
I	ASN141
J	GLN169

site_id	AE3
Number of Residues	4
Details	binding site for residue NO3 G 304

Chain	Residue
D	LYS180
G	GLU151
I	ASN144
I	LEU148

site_id	AE4
Number of Residues	7
Details	binding site for residue NO3 H 301

Chain	Residue
H	LEU165
H	ARG166
D	GLN169
D	CL305
G	LYS149
H	LYS162
H	ILE163

site_id	AE5
Number of Residues	4
Details	binding site for residue NA K 301

Chain	Residue
A	HOH406
E	HOH402
K	ASP145
K	SO4309

site_id	AE6
Number of Residues	2
Details	binding site for residue NA K 302

Chain	Residue
K	ASN136
K	NO3305

site_id	AE7
Number of Residues	2
Details	binding site for residue NA K 303

Chain	Residue
B	LYS180
K	ASP128

site_id	AE8
Number of Residues	6
Details	binding site for residue NO3 K 304

Chain	Residue
B	LEU165
B	GLN169
K	GLN139
K	PHE140
K	ASN143
K	HOH404

site_id	AE9
Number of Residues	3
Details	binding site for residue NO3 K 305

Chain	Residue
B	LEU165
B	LYS172
K	NA302

site_id	AF1
Number of Residues	6
Details	binding site for residue NO3 K 306

Chain	Residue
E	ASN136
K	ARG137
L	ARG166
L	PHE170
L	GLU173
L	HOH402

site_id	AF2
Number of Residues	4
Details	binding site for residue NH4 K 307

Chain	Residue
A	SER133
E	SER133
K	SER133
K	HOH403

site_id	AF3
Number of Residues	3
Details	binding site for residue EDO K 308

Chain	Residue
K	ASN127
K	ASP128
L	LYS181

site_id	AF4
Number of Residues	10
Details	binding site for residue SO4 K 309

Chain	Residue
A	ARG137
A	PHE140
A	ASN141
E	ARG137
E	PHE140
E	ASN141
K	ARG137
K	PHE140
K	ASN141
K	NA301

site_id	AF5
Number of Residues	1
Details	binding site for residue EDO L 301

Chain	Residue
L	LYS172

site_id	AF6
Number of Residues	4
Details	binding site for residue NA E 301

Chain	Residue
E	ASP128
E	PRO129
E	CL302
L	LYS180

site_id	AF7
Number of Residues	1
Details	binding site for residue CL E 302

Chain	Residue
E	NA301

site_id	AF8
Number of Residues	3
Details	binding site for residue IOD E 304

Chain	Residue
E	GLN139
E	PHE140
E	ASN143

site_id	AF9
Number of Residues	3
Details	binding site for residue NA F 304

Chain	Residue
F	LYS172
F	LEU176
F	CL307

site_id	AG1
Number of Residues	4
Details	binding site for residue NO3 F 305

Chain	Residue
A	ASN136
E	ARG137
F	ARG166
F	GLU173

site_id	AG2
Number of Residues	1
Details	binding site for residue CL F 307

Chain	Residue
F	NA304

site_id	AG3
Number of Residues	3
Details	binding site for residue NA I 301

Chain	Residue
C	EDO304
I	MET132
I	ASN136

site_id	AG4
Number of Residues	4
Details	binding site for residue NO3 I 303

Chain	Residue
C	PHE140
G	ARG137
G	PHE140
I	ARG137

site_id	AG5
Number of Residues	2
Details	binding site for residue NO3 I 304

Chain	Residue
I	MET132
I	HOH401

site_id	AG6
Number of Residues	7
Details	binding site for residue EDO I 305

Chain	Residue
I	ILE134
I	ARG137
I	LEU138
I	ASN141
J	ARG166
J	PHE170
J	GLU173

site_id	AG7
Number of Residues	1
Details	binding site for residue NO3 J 301

Chain	Residue
J	SER159

site_id	AG8
Number of Residues	2
Details	binding site for residue NH4 J 302

Chain	Residue
C	GLU151
J	MET187

site_id	AG9
Number of Residues	2
Details	binding site for residue EDO J 303

Chain	Residue
J	GLN169
J	LYS172

site_id	AH1
Number of Residues	4
Details	binding site for residue EDO J 304

Chain	Residue
C	PHE140
C	ASN144
J	GLU173
J	LYS180

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	162
Details	Coiled coil: {"evidences":[{"evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)