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5K8C

X-ray structure of KdnB, 3-deoxy-alpha-D-manno-octulosonate 8-oxidase, from Shewanella oneidensis

Functional Information from GO Data
ChainGOidnamespacecontents
A0004022molecular_functionalcohol dehydrogenase (NAD+) activity
A0009103biological_processlipopolysaccharide biosynthetic process
A0016491molecular_functionoxidoreductase activity
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues37
Detailsbinding site for residue NAD A 401
ChainResidue
AASP42
AASP104
ATHR140
AILE141
ATHR144
AALA146
ASER149
ATHR151
AVAL153
ALYS160
ALEU179
AVAL44
AVAL183
AGLN187
ATHR191
AASP194
AHOH520
AHOH544
AHOH561
AHOH617
AHOH629
AHOH632
AHIS45
AHOH658
AHOH663
AHOH692
AHOH697
AHOH707
AHOH709
AHOH749
AHOH751
AVAL67
AGLU70
APRO71
AGLY99
AGLY100
ASER101

site_idAC2
Number of Residues6
Detailsbinding site for residue PO4 A 402
ChainResidue
AASP34
AASP181
AVAL183
ATRP188
AASP235
AEDO405

site_idAC3
Number of Residues9
Detailsbinding site for residue PO4 A 403
ChainResidue
AGLU204
APHE286
ATYR287
APRO288
AGLU289
AGLY290
AHOH505
AHOH527
AHOH766

site_idAC4
Number of Residues4
Detailsbinding site for residue CL A 404
ChainResidue
AHIS271
AILE274
AHOH911
AHOH931

site_idAC5
Number of Residues5
Detailsbinding site for residue EDO A 405
ChainResidue
ATHR185
AHIS301
APO4402
AHOH509
AHOH712

site_idAC6
Number of Residues2
Detailsbinding site for residue CL A 406
ChainResidue
AGLN75
AHOH660

site_idAC7
Number of Residues6
Detailsbinding site for residue ZN A 407
ChainResidue
AASP194
AHIS258
AHIS272
AASN276
AHOH773
AHOH807

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PDB entries from 2024-10-30

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