5K7Z
Crystal structure of AibR in complex with isovaleryl coenzyme A and operator DNA
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000976 | molecular_function | transcription cis-regulatory region binding |
A | 0003677 | molecular_function | DNA binding |
A | 0003700 | molecular_function | DNA-binding transcription factor activity |
A | 0006355 | biological_process | regulation of DNA-templated transcription |
B | 0000976 | molecular_function | transcription cis-regulatory region binding |
B | 0003677 | molecular_function | DNA binding |
B | 0003700 | molecular_function | DNA-binding transcription factor activity |
B | 0006355 | biological_process | regulation of DNA-templated transcription |
C | 0000976 | molecular_function | transcription cis-regulatory region binding |
C | 0003677 | molecular_function | DNA binding |
C | 0003700 | molecular_function | DNA-binding transcription factor activity |
C | 0006355 | biological_process | regulation of DNA-templated transcription |
D | 0000976 | molecular_function | transcription cis-regulatory region binding |
D | 0003677 | molecular_function | DNA binding |
D | 0003700 | molecular_function | DNA-binding transcription factor activity |
D | 0006355 | biological_process | regulation of DNA-templated transcription |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 19 |
Details | binding site for residue IVC A 301 |
Chain | Residue |
A | TRP169 |
A | HOH407 |
B | MET69 |
B | PHE72 |
B | VAL109 |
B | ASP128 |
B | LYS131 |
B | LYS132 |
B | THR157 |
B | PHE161 |
B | HOH401 |
A | LYS172 |
A | TRP173 |
A | PHE174 |
A | LYS175 |
A | GLY178 |
A | ARG179 |
A | LEU180 |
A | HOH401 |
site_id | AC2 |
Number of Residues | 20 |
Details | binding site for residue IVC B 301 |
Chain | Residue |
A | MET69 |
A | PHE72 |
A | VAL109 |
A | ASP128 |
A | LYS131 |
A | LYS132 |
A | VAL135 |
A | THR157 |
A | PHE161 |
A | LEU164 |
A | LEU168 |
B | TRP169 |
B | LYS172 |
B | TRP173 |
B | PHE174 |
B | LYS175 |
B | GLY178 |
B | ARG179 |
B | LEU180 |
B | HOH405 |
site_id | AC3 |
Number of Residues | 15 |
Details | binding site for residue IVC C 301 |
Chain | Residue |
C | TRP169 |
C | LYS172 |
C | TRP173 |
C | LYS175 |
C | GLY178 |
C | ARG179 |
C | LEU180 |
C | HOH404 |
C | HOH405 |
D | ASP128 |
D | LYS131 |
D | LYS132 |
D | PHE161 |
D | LEU164 |
D | LEU168 |
site_id | AC4 |
Number of Residues | 19 |
Details | binding site for residue IVC D 301 |
Chain | Residue |
C | VAL109 |
C | ASP128 |
C | LYS131 |
C | LYS132 |
C | TYR134 |
C | VAL135 |
C | PHE161 |
C | LEU168 |
C | HOH402 |
D | TRP169 |
D | LYS172 |
D | TRP173 |
D | PHE174 |
D | LYS175 |
D | GLY178 |
D | ARG179 |
D | LEU180 |
D | HOH403 |
D | HOH405 |
site_id | AC5 |
Number of Residues | 42 |
Details | binding site for Di-nucleotide DG E 7 and DA F 14 |
Chain | Residue |
E | DG12 |
E | DT13 |
E | DG15 |
F | DC2 |
F | DT3 |
F | DA4 |
F | DC6 |
F | DA8 |
F | DT9 |
F | DC10 |
F | DG11 |
F | DG12 |
F | DT13 |
F | DG15 |
F | HOH101 |
F | HOH106 |
A | THR34 |
A | SER35 |
A | MET36 |
A | THR46 |
A | LYS47 |
A | ALA48 |
A | TYR51 |
A | LYS57 |
B | SER35 |
C | SER35 |
C | ALA48 |
D | THR34 |
D | SER35 |
D | MET36 |
D | LYS47 |
D | ALA48 |
D | TYR51 |
D | LYS57 |
E | DC2 |
E | DT3 |
E | DA4 |
E | DC6 |
E | DA8 |
E | DT9 |
E | DC10 |
E | DG11 |
site_id | AC6 |
Number of Residues | 42 |
Details | binding site for Di-nucleotide DG F 7 and DA E 14 |
Chain | Residue |
A | THR34 |
A | SER35 |
A | MET36 |
A | THR46 |
A | LYS47 |
A | ALA48 |
A | TYR51 |
A | LYS57 |
B | SER35 |
C | SER35 |
C | ALA48 |
D | THR34 |
D | SER35 |
D | MET36 |
D | LYS47 |
D | ALA48 |
D | TYR51 |
D | LYS57 |
E | DC2 |
E | DT3 |
E | DA4 |
E | DC6 |
E | DA8 |
E | DT9 |
E | DC10 |
E | DG11 |
E | DG12 |
E | DT13 |
E | DG15 |
F | DC2 |
F | DT3 |
F | DA4 |
F | DC6 |
F | DA8 |
F | DT9 |
F | DC10 |
F | DG11 |
F | DG12 |
F | DT13 |
F | DG15 |
F | HOH101 |
F | HOH106 |