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5K73

as-isolated Dbr1 with Fe(II) and Zn(II)

Functional Information from GO Data
ChainGOidnamespacecontents
A0000375biological_processRNA splicing, via transesterification reactions
A0000398biological_processmRNA splicing, via spliceosome
A0003723molecular_functionRNA binding
A0005506molecular_functioniron ion binding
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0006397biological_processmRNA processing
A0008270molecular_functionzinc ion binding
A0008419molecular_functionRNA lariat debranching enzyme activity
A0016787molecular_functionhydrolase activity
A0030145molecular_functionmanganese ion binding
A0046872molecular_functionmetal ion binding
A0048471cellular_componentperinuclear region of cytoplasm
B0000375biological_processRNA splicing, via transesterification reactions
B0000398biological_processmRNA splicing, via spliceosome
B0003723molecular_functionRNA binding
B0005506molecular_functioniron ion binding
B0005634cellular_componentnucleus
B0005737cellular_componentcytoplasm
B0006397biological_processmRNA processing
B0008270molecular_functionzinc ion binding
B0008419molecular_functionRNA lariat debranching enzyme activity
B0016787molecular_functionhydrolase activity
B0030145molecular_functionmanganese ion binding
B0046872molecular_functionmetal ion binding
B0048471cellular_componentperinuclear region of cytoplasm
C0000375biological_processRNA splicing, via transesterification reactions
C0000398biological_processmRNA splicing, via spliceosome
C0003723molecular_functionRNA binding
C0005506molecular_functioniron ion binding
C0005634cellular_componentnucleus
C0005737cellular_componentcytoplasm
C0006397biological_processmRNA processing
C0008270molecular_functionzinc ion binding
C0008419molecular_functionRNA lariat debranching enzyme activity
C0016787molecular_functionhydrolase activity
C0030145molecular_functionmanganese ion binding
C0046872molecular_functionmetal ion binding
C0048471cellular_componentperinuclear region of cytoplasm
D0000375biological_processRNA splicing, via transesterification reactions
D0000398biological_processmRNA splicing, via spliceosome
D0003723molecular_functionRNA binding
D0005506molecular_functioniron ion binding
D0005634cellular_componentnucleus
D0005737cellular_componentcytoplasm
D0006397biological_processmRNA processing
D0008270molecular_functionzinc ion binding
D0008419molecular_functionRNA lariat debranching enzyme activity
D0016787molecular_functionhydrolase activity
D0030145molecular_functionmanganese ion binding
D0046872molecular_functionmetal ion binding
D0048471cellular_componentperinuclear region of cytoplasm
E0000375biological_processRNA splicing, via transesterification reactions
E0000398biological_processmRNA splicing, via spliceosome
E0003723molecular_functionRNA binding
E0005506molecular_functioniron ion binding
E0005634cellular_componentnucleus
E0005737cellular_componentcytoplasm
E0006397biological_processmRNA processing
E0008270molecular_functionzinc ion binding
E0008419molecular_functionRNA lariat debranching enzyme activity
E0016787molecular_functionhydrolase activity
E0030145molecular_functionmanganese ion binding
E0046872molecular_functionmetal ion binding
E0048471cellular_componentperinuclear region of cytoplasm
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue FE2 A 401
ChainResidue
AASP45
AASN90
AHIS180
AHIS230
AZN402
AOH406

site_idAC2
Number of Residues6
Detailsbinding site for residue ZN A 402
ChainResidue
AHIS232
AFE2401
AOH406
ACYS14
AHIS16
AASP45

site_idAC3
Number of Residues5
Detailsbinding site for residue SO4 A 403
ChainResidue
AARG50
AASN95
AHIS99
APRO146
AHOH538

site_idAC4
Number of Residues3
Detailsbinding site for residue SO4 A 404
ChainResidue
AGLN173
ALYS224
AHOH502

site_idAC5
Number of Residues4
Detailsbinding site for residue SO4 A 405
ChainResidue
AGLN163
ASER298
AILE299
ASER300

site_idAC6
Number of Residues7
Detailsbinding site for residue OH A 406
ChainResidue
AHIS16
AASP45
AHIS230
AHIS232
AFE2401
AZN402
AHOH501

site_idAC7
Number of Residues6
Detailsbinding site for residue FE2 B 401
ChainResidue
BASP45
BASN90
BHIS180
BHIS230
BZN402
BOH406

site_idAC8
Number of Residues6
Detailsbinding site for residue ZN B 402
ChainResidue
BCYS14
BHIS16
BASP45
BHIS232
BFE2401
BOH406

site_idAC9
Number of Residues6
Detailsbinding site for residue SO4 B 403
ChainResidue
BARG50
BASN95
BHIS99
BPRO146
BHOH517
BHOH590

site_idAD1
Number of Residues3
Detailsbinding site for residue SO4 B 404
ChainResidue
BLYS59
BLYS134
BHIS156

site_idAD2
Number of Residues4
Detailsbinding site for residue SO4 B 405
ChainResidue
BTHR307
BLYS308
CGLN184
CLYS215

site_idAD3
Number of Residues7
Detailsbinding site for residue OH B 406
ChainResidue
BHIS16
BASP45
BHIS230
BHIS232
BFE2401
BZN402
BHOH501

site_idAD4
Number of Residues5
Detailsbinding site for residue SO4 C 401
ChainResidue
BGLN184
BLYS215
CTHR307
CLYS308
CHOH544

site_idAD5
Number of Residues6
Detailsbinding site for residue FE2 C 402
ChainResidue
CASP45
CASN90
CHIS180
CHIS230
CZN403
COH406

site_idAD6
Number of Residues6
Detailsbinding site for residue ZN C 403
ChainResidue
CCYS14
CHIS16
CASP45
CHIS232
CFE2402
COH406

site_idAD7
Number of Residues5
Detailsbinding site for residue SO4 C 404
ChainResidue
CARG50
CASN95
CHIS99
CHOH504
CHOH516

site_idAD8
Number of Residues6
Detailsbinding site for residue SO4 C 405
ChainResidue
CLYS320
CTYR321
CHOH564
DTYR51
DTYR74
DTHR332

site_idAD9
Number of Residues7
Detailsbinding site for residue OH C 406
ChainResidue
CHIS16
CASP45
CHIS230
CHIS232
CFE2402
CZN403
CHOH501

site_idAE1
Number of Residues6
Detailsbinding site for residue FE2 D 401
ChainResidue
DASN90
DHIS180
DHIS230
DZN402
DOH407
DASP45

site_idAE2
Number of Residues6
Detailsbinding site for residue ZN D 402
ChainResidue
DCYS14
DHIS16
DASP45
DHIS232
DFE2401
DOH407

site_idAE3
Number of Residues8
Detailsbinding site for residue SO4 D 403
ChainResidue
DARG50
DASN95
DHIS99
DPRO146
DHOH512
DHOH540
DHOH573
DHOH578

site_idAE4
Number of Residues5
Detailsbinding site for residue SO4 D 404
ChainResidue
DGLN163
DSER298
DILE299
DSER300
DHOH580

site_idAE5
Number of Residues3
Detailsbinding site for residue SO4 D 405
ChainResidue
DILE132
DPHE155
DHIS156

site_idAE6
Number of Residues2
Detailsbinding site for residue SO4 D 406
ChainResidue
DSER172
DGLN173

site_idAE7
Number of Residues7
Detailsbinding site for residue OH D 407
ChainResidue
DHIS16
DASP45
DHIS230
DHIS232
DFE2401
DZN402
DHOH501

site_idAE8
Number of Residues6
Detailsbinding site for residue FE2 E 401
ChainResidue
EASP45
EASN90
EHIS180
EHIS230
EZN402
EOH404

site_idAE9
Number of Residues6
Detailsbinding site for residue ZN E 402
ChainResidue
ECYS14
EHIS16
EASP45
EHIS232
EFE2401
EOH404

site_idAF1
Number of Residues6
Detailsbinding site for residue SO4 E 403
ChainResidue
EARG50
EASN95
EHIS99
EPRO146
EHOH517
EHOH572

site_idAF2
Number of Residues7
Detailsbinding site for residue OH E 404
ChainResidue
EHIS16
EASP45
EHIS230
EHIS232
EFE2401
EZN402
EHOH501

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues10
DetailsBINDING: BINDING => ECO:0000269|PubMed:27930312, ECO:0000269|PubMed:28504306, ECO:0007744|PDB:5K73, ECO:0007744|PDB:5K77, ECO:0007744|PDB:5K78, ECO:0007744|PDB:5UKI
ChainResidueDetails
ACYS14
AHIS16
BCYS14
BHIS16
CCYS14
CHIS16
DCYS14
DHIS16
ECYS14
EHIS16

site_idSWS_FT_FI2
Number of Residues10
DetailsBINDING: BINDING => ECO:0000269|PubMed:25123664, ECO:0000269|PubMed:27930312, ECO:0000269|PubMed:28504306, ECO:0007744|PDB:4PEF, ECO:0007744|PDB:4PEG, ECO:0007744|PDB:4PEH, ECO:0007744|PDB:4PEI, ECO:0007744|PDB:5K73, ECO:0007744|PDB:5K77, ECO:0007744|PDB:5K78, ECO:0007744|PDB:5UKI
ChainResidueDetails
AASP45
AHIS180
BASP45
BHIS180
CASP45
CHIS180
DASP45
DHIS180
EASP45
EHIS180

site_idSWS_FT_FI3
Number of Residues15
DetailsBINDING: BINDING => ECO:0000269|PubMed:25123664, ECO:0000269|Ref.6, ECO:0007744|PDB:4PEH, ECO:0007744|PDB:8DZK
ChainResidueDetails
ALYS59
ALYS134
AHIS156
BLYS59
BLYS134
BHIS156
CLYS59
CLYS134
CHIS156
DLYS59
DLYS134
DHIS156
ELYS59
ELYS134
EHIS156

site_idSWS_FT_FI4
Number of Residues5
DetailsBINDING: BINDING => ECO:0000269|PubMed:25123664, ECO:0000269|Ref.6, ECO:0007744|PDB:4PEG, ECO:0007744|PDB:4PEI, ECO:0007744|PDB:8DZK
ChainResidueDetails
AASN90
BASN90
CASN90
DASN90
EASN90

site_idSWS_FT_FI5
Number of Residues5
DetailsBINDING: BINDING => ECO:0000269|PubMed:25123664, ECO:0007744|PDB:4PEG, ECO:0007744|PDB:4PEI
ChainResidueDetails
AHIS91
BHIS91
CHIS91
DHIS91
EHIS91

site_idSWS_FT_FI6
Number of Residues10
DetailsBINDING: BINDING => ECO:0000269|PubMed:25123664, ECO:0000269|PubMed:27930312, ECO:0007744|PDB:4PEG, ECO:0007744|PDB:4PEI, ECO:0007744|PDB:5K77, ECO:0007744|PDB:5K78
ChainResidueDetails
AGLY201
AHIS232
BGLY201
BHIS232
CGLY201
CHIS232
DGLY201
DHIS232
EGLY201
EHIS232

site_idSWS_FT_FI7
Number of Residues5
DetailsBINDING: BINDING => ECO:0000269|PubMed:25123664, ECO:0000269|PubMed:27930312, ECO:0007744|PDB:4PEG, ECO:0007744|PDB:4PEH, ECO:0007744|PDB:4PEI, ECO:0007744|PDB:5K77, ECO:0007744|PDB:5K78
ChainResidueDetails
AASP205
BASP205
CASP205
DASP205
EASP205

site_idSWS_FT_FI8
Number of Residues10
DetailsBINDING: BINDING => ECO:0000269|PubMed:27930312, ECO:0007744|PDB:4PEG, ECO:0007744|PDB:4PEI
ChainResidueDetails
AHIS230
AMET231
BHIS230
BMET231
CHIS230
CMET231
DHIS230
DMET231
EHIS230
EMET231

221051

PDB entries from 2024-06-12

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