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5K69

Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase 2 with carbapenem drug T224

Functional Information from GO Data
ChainGOidnamespacecontents
A0016740molecular_functiontransferase activity
B0016740molecular_functiontransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue GOL A 501
ChainResidue
AGLU213
AHIS214
APHE215
AILE291
ATRP394

site_idAC2
Number of Residues7
Detailsbinding site for residue GOL A 502
ChainResidue
APHE200
ATRP210
AHOH608
AILE188
ALYS189
AILE190
AGLY198

site_idAC3
Number of Residues13
Detailsbinding site for residue 6QR A 503
ChainResidue
AMET303
ATYR318
ATHR320
AGLY332
AHIS336
ATRP340
ASER351
AHIS352
AGLY353
ACYS354
AASN356
AHOH665
AHOH694

site_idAC4
Number of Residues4
Detailsbinding site for residue GOL B 501
ChainResidue
BGLU213
BHIS214
BPHE215
BILE291

site_idAC5
Number of Residues15
Detailsbinding site for Di-peptide 6QR B 502 and CYS B 354
ChainResidue
BSER279
BMET280
BMET303
BTYR318
BGLY332
BPHE334
BHIS336
BTRP340
BSER351
BHIS352
BGLY353
BLEU355
BASN356
BHOH605
BHOH727

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor/acceptor => ECO:0000255|PROSITE-ProRule:PRU01373, ECO:0000305|PubMed:23519417
ChainResidueDetails
AHIS336
BHIS336

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Nucleophile => ECO:0000255|PROSITE-ProRule:PRU01373, ECO:0000269|PubMed:23519417
ChainResidueDetails
ACYS354
BCYS354

site_idSWS_FT_FI3
Number of Residues6
DetailsBINDING:
ChainResidueDetails
AASP232
AGLU235
AGLY236
BASP232
BGLU235
BGLY236

site_idSWS_FT_FI4
Number of Residues6
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
ATYR318
ASER331
AASN356
BTYR318
BSER331
BASN356

site_idSWS_FT_FI5
Number of Residues2
DetailsSITE: Binds to carbapenem drug (covalent)
ChainResidueDetails
ACYS354
BCYS354

site_idSWS_FT_FI6
Number of Residues2
DetailsLIPID: S-diacylglycerol cysteine => ECO:0000255|PROSITE-ProRule:PRU00303
ChainResidueDetails
ACYS35
BCYS35

222415

PDB entries from 2024-07-10

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