5K0P
Crystal structure of the archaeosine synthase QueF-Like in the apo form
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0008033 | biological_process | tRNA processing |
A | 0008616 | biological_process | queuosine biosynthetic process |
A | 0016740 | molecular_function | transferase activity |
A | 0033739 | molecular_function | preQ1 synthase activity |
B | 0008033 | biological_process | tRNA processing |
B | 0008616 | biological_process | queuosine biosynthetic process |
B | 0016740 | molecular_function | transferase activity |
B | 0033739 | molecular_function | preQ1 synthase activity |
C | 0008033 | biological_process | tRNA processing |
C | 0008616 | biological_process | queuosine biosynthetic process |
C | 0016740 | molecular_function | transferase activity |
C | 0033739 | molecular_function | preQ1 synthase activity |
D | 0008033 | biological_process | tRNA processing |
D | 0008616 | biological_process | queuosine biosynthetic process |
D | 0016740 | molecular_function | transferase activity |
D | 0033739 | molecular_function | preQ1 synthase activity |
E | 0008033 | biological_process | tRNA processing |
E | 0008616 | biological_process | queuosine biosynthetic process |
E | 0016740 | molecular_function | transferase activity |
E | 0033739 | molecular_function | preQ1 synthase activity |
F | 0008033 | biological_process | tRNA processing |
F | 0008616 | biological_process | queuosine biosynthetic process |
F | 0016740 | molecular_function | transferase activity |
F | 0033739 | molecular_function | preQ1 synthase activity |
G | 0008033 | biological_process | tRNA processing |
G | 0008616 | biological_process | queuosine biosynthetic process |
G | 0016740 | molecular_function | transferase activity |
G | 0033739 | molecular_function | preQ1 synthase activity |
H | 0008033 | biological_process | tRNA processing |
H | 0008616 | biological_process | queuosine biosynthetic process |
H | 0016740 | molecular_function | transferase activity |
H | 0033739 | molecular_function | preQ1 synthase activity |
I | 0008033 | biological_process | tRNA processing |
I | 0008616 | biological_process | queuosine biosynthetic process |
I | 0016740 | molecular_function | transferase activity |
I | 0033739 | molecular_function | preQ1 synthase activity |
J | 0008033 | biological_process | tRNA processing |
J | 0008616 | biological_process | queuosine biosynthetic process |
J | 0016740 | molecular_function | transferase activity |
J | 0033739 | molecular_function | preQ1 synthase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 3 |
Details | binding site for residue SCN A 201 |
Chain | Residue |
A | PRO22 |
A | ASP28 |
A | TYR90 |
site_id | AC2 |
Number of Residues | 2 |
Details | binding site for residue SCN B 201 |
Chain | Residue |
B | ASP28 |
B | HIS62 |
site_id | AC3 |
Number of Residues | 1 |
Details | binding site for residue PGE C 201 |
Chain | Residue |
C | TYR89 |
site_id | AC4 |
Number of Residues | 3 |
Details | binding site for residue SCN C 202 |
Chain | Residue |
C | PRO22 |
C | TYR90 |
C | HOH330 |
site_id | AC5 |
Number of Residues | 2 |
Details | binding site for residue PGE D 201 |
Chain | Residue |
D | TYR89 |
D | GLU94 |
site_id | AC6 |
Number of Residues | 3 |
Details | binding site for residue SCN D 202 |
Chain | Residue |
D | PRO22 |
D | ASP28 |
D | TYR90 |
site_id | AC7 |
Number of Residues | 2 |
Details | binding site for residue SCN E 201 |
Chain | Residue |
E | ASP28 |
E | TYR90 |
site_id | AC8 |
Number of Residues | 2 |
Details | binding site for residue PGE F 201 |
Chain | Residue |
F | ARG16 |
G | GLU94 |
site_id | AC9 |
Number of Residues | 3 |
Details | binding site for residue SCN F 202 |
Chain | Residue |
F | PRO22 |
F | ASP28 |
F | HIS62 |
site_id | AD1 |
Number of Residues | 3 |
Details | binding site for residue SCN G 201 |
Chain | Residue |
G | ASP28 |
G | TYR90 |
G | HOH321 |
site_id | AD2 |
Number of Residues | 4 |
Details | binding site for residue SCN H 201 |
Chain | Residue |
H | PRO22 |
H | ILE23 |
H | ASP28 |
H | TYR90 |
site_id | AD3 |
Number of Residues | 4 |
Details | binding site for residue PG4 I 201 |
Chain | Residue |
I | ARG16 |
I | LYS87 |
I | HOH316 |
I | HOH337 |
site_id | AD4 |
Number of Residues | 3 |
Details | binding site for residue SCN I 202 |
Chain | Residue |
I | ASP28 |
I | LEU61 |
I | HOH310 |
site_id | AD5 |
Number of Residues | 3 |
Details | binding site for residue SCN J 201 |
Chain | Residue |
J | ASP28 |
J | LEU61 |
J | HOH312 |
Functional Information from PROSITE/UniProt
site_id | PS00092 |
Number of Residues | 7 |
Details | N6_MTASE N-6 Adenine-specific DNA methylases signature. AAVNPPY |
Chain | Residue | Details |
A | ALA75-TYR81 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 10 |
Details | ACT_SITE: Thioimide intermediate => ECO:0000269|PubMed:27802572, ECO:0000269|PubMed:28383498 |
Chain | Residue | Details |
A | CYS21 | |
J | CYS21 | |
B | CYS21 | |
C | CYS21 | |
D | CYS21 | |
E | CYS21 | |
F | CYS21 | |
G | CYS21 | |
H | CYS21 | |
I | CYS21 |
site_id | SWS_FT_FI2 |
Number of Residues | 10 |
Details | ACT_SITE: Proton donor/acceptor => ECO:0000305|PubMed:27802572 |
Chain | Residue | Details |
A | ASP28 | |
J | ASP28 | |
B | ASP28 | |
C | ASP28 | |
D | ASP28 | |
E | ASP28 | |
F | ASP28 | |
G | ASP28 | |
H | ASP28 | |
I | ASP28 |
site_id | SWS_FT_FI3 |
Number of Residues | 20 |
Details | BINDING: in other chain => ECO:0000269|PubMed:27802572 |
Chain | Residue | Details |
A | ASP28 | |
E | HIS62 | |
F | ASP28 | |
F | HIS62 | |
G | ASP28 | |
G | HIS62 | |
H | ASP28 | |
H | HIS62 | |
I | ASP28 | |
I | HIS62 | |
J | ASP28 | |
A | HIS62 | |
J | HIS62 | |
B | ASP28 | |
B | HIS62 | |
C | ASP28 | |
C | HIS62 | |
D | ASP28 | |
D | HIS62 | |
E | ASP28 |
site_id | SWS_FT_FI4 |
Number of Residues | 10 |
Details | BINDING: BINDING => ECO:0000269|PubMed:27802572 |
Chain | Residue | Details |
A | LEU43 | |
J | LEU43 | |
B | LEU43 | |
C | LEU43 | |
D | LEU43 | |
E | LEU43 | |
F | LEU43 | |
G | LEU43 | |
H | LEU43 | |
I | LEU43 |