Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

5JYG

Cryo-EM structure of the MamK filament at 6.5 A

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000166	molecular_function	nucleotide binding
A	0005524	molecular_function	ATP binding
A	0005525	molecular_function	GTP binding
A	0005737	cellular_component	cytoplasm
A	0005856	cellular_component	cytoskeleton
A	0016787	molecular_function	hydrolase activity
A	0016887	molecular_function	ATP hydrolysis activity
A	0046872	molecular_function	metal ion binding
A	0110146	cellular_component	magnetosome membrane
A	0140923	biological_process	magnetosome assembly
B	0000166	molecular_function	nucleotide binding
B	0005524	molecular_function	ATP binding
B	0005525	molecular_function	GTP binding
B	0005737	cellular_component	cytoplasm
B	0005856	cellular_component	cytoskeleton
B	0016787	molecular_function	hydrolase activity
B	0016887	molecular_function	ATP hydrolysis activity
B	0046872	molecular_function	metal ion binding
B	0110146	cellular_component	magnetosome membrane
B	0140923	biological_process	magnetosome assembly
C	0000166	molecular_function	nucleotide binding
C	0005524	molecular_function	ATP binding
C	0005525	molecular_function	GTP binding
C	0005737	cellular_component	cytoplasm
C	0005856	cellular_component	cytoskeleton
C	0016787	molecular_function	hydrolase activity
C	0016887	molecular_function	ATP hydrolysis activity
C	0046872	molecular_function	metal ion binding
C	0110146	cellular_component	magnetosome membrane
C	0140923	biological_process	magnetosome assembly
D	0000166	molecular_function	nucleotide binding
D	0005524	molecular_function	ATP binding
D	0005525	molecular_function	GTP binding
D	0005737	cellular_component	cytoplasm
D	0005856	cellular_component	cytoskeleton
D	0016787	molecular_function	hydrolase activity
D	0016887	molecular_function	ATP hydrolysis activity
D	0046872	molecular_function	metal ion binding
D	0110146	cellular_component	magnetosome membrane
D	0140923	biological_process	magnetosome assembly
E	0000166	molecular_function	nucleotide binding
E	0005524	molecular_function	ATP binding
E	0005525	molecular_function	GTP binding
E	0005737	cellular_component	cytoplasm
E	0005856	cellular_component	cytoskeleton
E	0016787	molecular_function	hydrolase activity
E	0016887	molecular_function	ATP hydrolysis activity
E	0046872	molecular_function	metal ion binding
E	0110146	cellular_component	magnetosome membrane
E	0140923	biological_process	magnetosome assembly
F	0000166	molecular_function	nucleotide binding
F	0005524	molecular_function	ATP binding
F	0005525	molecular_function	GTP binding
F	0005737	cellular_component	cytoplasm
F	0005856	cellular_component	cytoskeleton
F	0016787	molecular_function	hydrolase activity
F	0016887	molecular_function	ATP hydrolysis activity
F	0046872	molecular_function	metal ion binding
F	0110146	cellular_component	magnetosome membrane
F	0140923	biological_process	magnetosome assembly
G	0000166	molecular_function	nucleotide binding
G	0005524	molecular_function	ATP binding
G	0005525	molecular_function	GTP binding
G	0005737	cellular_component	cytoplasm
G	0005856	cellular_component	cytoskeleton
G	0016787	molecular_function	hydrolase activity
G	0016887	molecular_function	ATP hydrolysis activity
G	0046872	molecular_function	metal ion binding
G	0110146	cellular_component	magnetosome membrane
G	0140923	biological_process	magnetosome assembly
H	0000166	molecular_function	nucleotide binding
H	0005524	molecular_function	ATP binding
H	0005525	molecular_function	GTP binding
H	0005737	cellular_component	cytoplasm
H	0005856	cellular_component	cytoskeleton
H	0016787	molecular_function	hydrolase activity
H	0016887	molecular_function	ATP hydrolysis activity
H	0046872	molecular_function	metal ion binding
H	0110146	cellular_component	magnetosome membrane
H	0140923	biological_process	magnetosome assembly
I	0000166	molecular_function	nucleotide binding
I	0005524	molecular_function	ATP binding
I	0005525	molecular_function	GTP binding
I	0005737	cellular_component	cytoplasm
I	0005856	cellular_component	cytoskeleton
I	0016787	molecular_function	hydrolase activity
I	0016887	molecular_function	ATP hydrolysis activity
I	0046872	molecular_function	metal ion binding
I	0110146	cellular_component	magnetosome membrane
I	0140923	biological_process	magnetosome assembly
J	0000166	molecular_function	nucleotide binding
J	0005524	molecular_function	ATP binding
J	0005525	molecular_function	GTP binding
J	0005737	cellular_component	cytoplasm
J	0005856	cellular_component	cytoskeleton
J	0016787	molecular_function	hydrolase activity
J	0016887	molecular_function	ATP hydrolysis activity
J	0046872	molecular_function	metal ion binding
J	0110146	cellular_component	magnetosome membrane
J	0140923	biological_process	magnetosome assembly
K	0000166	molecular_function	nucleotide binding
K	0005524	molecular_function	ATP binding
K	0005525	molecular_function	GTP binding
K	0005737	cellular_component	cytoplasm
K	0005856	cellular_component	cytoskeleton
K	0016787	molecular_function	hydrolase activity
K	0016887	molecular_function	ATP hydrolysis activity
K	0046872	molecular_function	metal ion binding
K	0110146	cellular_component	magnetosome membrane
K	0140923	biological_process	magnetosome assembly
L	0000166	molecular_function	nucleotide binding
L	0005524	molecular_function	ATP binding
L	0005525	molecular_function	GTP binding
L	0005737	cellular_component	cytoplasm
L	0005856	cellular_component	cytoskeleton
L	0016787	molecular_function	hydrolase activity
L	0016887	molecular_function	ATP hydrolysis activity
L	0046872	molecular_function	metal ion binding
L	0110146	cellular_component	magnetosome membrane
L	0140923	biological_process	magnetosome assembly
M	0000166	molecular_function	nucleotide binding
M	0005524	molecular_function	ATP binding
M	0005525	molecular_function	GTP binding
M	0005737	cellular_component	cytoplasm
M	0005856	cellular_component	cytoskeleton
M	0016787	molecular_function	hydrolase activity
M	0016887	molecular_function	ATP hydrolysis activity
M	0046872	molecular_function	metal ion binding
M	0110146	cellular_component	magnetosome membrane
M	0140923	biological_process	magnetosome assembly
N	0000166	molecular_function	nucleotide binding
N	0005524	molecular_function	ATP binding
N	0005525	molecular_function	GTP binding
N	0005737	cellular_component	cytoplasm
N	0005856	cellular_component	cytoskeleton
N	0016787	molecular_function	hydrolase activity
N	0016887	molecular_function	ATP hydrolysis activity
N	0046872	molecular_function	metal ion binding
N	0110146	cellular_component	magnetosome membrane
N	0140923	biological_process	magnetosome assembly

Functional Information from PDB Data

site_id	AC1
Number of Residues	2
Details	binding site for residue MG A 401

Chain	Residue
A	ASP161
A	ADP402

site_id	AC2
Number of Residues	13
Details	binding site for residue ADP A 402

Chain	Residue
A	LYS218
A	GLU219
A	SER222
A	GLY289
A	ARG292
A	MG401
A	GLY19
A	THR20
A	SER21
A	GLY163
A	ALA164
A	GLY165
A	CYS215

site_id	AC3
Number of Residues	3
Details	binding site for residue MG B 401

Chain	Residue
B	GLU143
B	ASP161
B	ADP402

site_id	AC4
Number of Residues	14
Details	binding site for residue ADP B 402

Chain	Residue
B	GLY19
B	THR20
B	SER21
B	HIS22
B	ILE162
B	GLY163
B	ALA164
B	LYS218
B	GLU219
B	SER222
B	GLY288
B	GLY289
B	ARG292
B	MG401

site_id	AC5
Number of Residues	2
Details	binding site for residue MG C 401

Chain	Residue
C	GLU143
C	ADP402

site_id	AC6
Number of Residues	12
Details	binding site for residue ADP C 402

Chain	Residue
C	GLY19
C	THR20
C	SER21
C	HIS22
C	GLY163
C	ALA164
C	GLY165
C	LYS218
C	GLU219
C	GLY289
C	ARG292
C	MG401

site_id	AC7
Number of Residues	3
Details	binding site for residue MG D 401

Chain	Residue
D	GLU143
D	ASP161
D	ADP402

site_id	AC8
Number of Residues	13
Details	binding site for residue ADP D 402

Chain	Residue
D	GLY19
D	THR20
D	SER21
D	ASP76
D	GLY163
D	ALA164
D	GLY165
D	CYS215
D	LYS218
D	GLU219
D	GLY289
D	ARG292
D	MG401

site_id	AC9
Number of Residues	2
Details	binding site for residue MG E 401

Chain	Residue
E	ASP161
E	ADP402

site_id	AD1
Number of Residues	13
Details	binding site for residue ADP E 402

Chain	Residue
E	GLY19
E	THR20
E	SER21
E	GLY163
E	ALA164
E	GLY165
E	CYS215
E	LYS218
E	GLU219
E	SER222
E	GLY289
E	ARG292
E	MG401

site_id	AD2
Number of Residues	3
Details	binding site for residue MG F 401

Chain	Residue
F	GLU143
F	ASP161
F	ADP402

site_id	AD3
Number of Residues	14
Details	binding site for residue ADP F 402

Chain	Residue
F	GLY19
F	THR20
F	SER21
F	HIS22
F	ILE162
F	GLY163
F	ALA164
F	LYS218
F	GLU219
F	SER222
F	GLY288
F	GLY289
F	ARG292
F	MG401

site_id	AD4
Number of Residues	2
Details	binding site for residue MG G 401

Chain	Residue
G	GLU143
G	ADP402

site_id	AD5
Number of Residues	12
Details	binding site for residue ADP G 402

Chain	Residue
G	HIS22
G	GLY163
G	ALA164
G	GLY165
G	LYS218
G	GLU219
G	GLY289
G	ARG292
G	MG401
G	GLY19
G	THR20
G	SER21

site_id	AD6
Number of Residues	2
Details	binding site for residue MG H 401

Chain	Residue
H	GLU143
H	ADP402

site_id	AD7
Number of Residues	12
Details	binding site for residue ADP H 402

Chain	Residue
H	GLY19
H	THR20
H	SER21
H	HIS22
H	GLY163
H	ALA164
H	GLY165
H	LYS218
H	GLU219
H	GLY289
H	ARG292
H	MG401

site_id	AD8
Number of Residues	3
Details	binding site for residue MG I 401

Chain	Residue
I	GLU143
I	ASP161
I	ADP402

site_id	AD9
Number of Residues	13
Details	binding site for residue ADP I 402

Chain	Residue
I	GLY19
I	THR20
I	SER21
I	ASP76
I	GLY163
I	ALA164
I	GLY165
I	CYS215
I	LYS218
I	GLU219
I	GLY289
I	ARG292
I	MG401

site_id	AE1
Number of Residues	2
Details	binding site for residue MG J 401

Chain	Residue
J	ASP161
J	ADP402

site_id	AE2
Number of Residues	13
Details	binding site for residue ADP J 402

Chain	Residue
J	GLY19
J	THR20
J	SER21
J	GLY163
J	ALA164
J	GLY165
J	CYS215
J	LYS218
J	GLU219
J	SER222
J	GLY289
J	ARG292
J	MG401

site_id	AE3
Number of Residues	3
Details	binding site for residue MG K 401

Chain	Residue
K	GLU143
K	ASP161
K	ADP402

site_id	AE4
Number of Residues	14
Details	binding site for residue ADP K 402

Chain	Residue
K	GLY19
K	THR20
K	SER21
K	HIS22
K	ILE162
K	GLY163
K	ALA164
K	LYS218
K	GLU219
K	SER222
K	GLY288
K	GLY289
K	ARG292
K	MG401

site_id	AE5
Number of Residues	2
Details	binding site for residue MG L 401

Chain	Residue
L	GLU143
L	ADP402

site_id	AE6
Number of Residues	12
Details	binding site for residue ADP L 402

Chain	Residue
L	GLY19
L	THR20
L	SER21
L	HIS22
L	GLY163
L	ALA164
L	GLY165
L	LYS218
L	GLU219
L	GLY289
L	ARG292
L	MG401

site_id	AE7
Number of Residues	3
Details	binding site for residue MG M 401

Chain	Residue
M	GLU143
M	ASP161
M	ADP402

site_id	AE8
Number of Residues	12
Details	binding site for residue ADP M 402

Chain	Residue
M	GLY19
M	THR20
M	SER21
M	GLY163
M	ALA164
M	GLY165
M	CYS215
M	LYS218
M	GLU219
M	GLY289
M	ARG292
M	MG401

site_id	AE9
Number of Residues	2
Details	binding site for residue MG N 401

Chain	Residue
N	ASP161
N	ADP402

site_id	AF1
Number of Residues	13
Details	binding site for residue ADP N 402

Chain	Residue
N	GLY19
N	THR20
N	SER21
N	GLY163
N	ALA164
N	GLY165
N	CYS215
N	LYS218
N	GLU219
N	SER222
N	GLY289
N	ARG292
N	MG401

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	98
Details	Binding site: {"evidences":[{"source":"PubMed","id":"27391173","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27821762","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5JYG","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5LJW","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	14
Details	Binding site: {"evidences":[{"source":"PubMed","id":"27821762","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5LJV","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	28
Details	Binding site: {"evidences":[{"source":"PubMed","id":"27391173","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27821762","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21883528","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"5JYG","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5LJW","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)