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5JX8

New improved structure of D4 in trigonal space group

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0004844molecular_functionuracil DNA N-glycosylase activity
A0006281biological_processDNA repair
A0016787molecular_functionhydrolase activity
A0016799molecular_functionhydrolase activity, hydrolyzing N-glycosyl compounds
B0003677molecular_functionDNA binding
B0004844molecular_functionuracil DNA N-glycosylase activity
B0006281biological_processDNA repair
B0016787molecular_functionhydrolase activity
B0016799molecular_functionhydrolase activity, hydrolyzing N-glycosyl compounds
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue SO4 A 301
ChainResidue
ALYS160
ATHR161
ATYR180
AHIS181
AHOH459
AHOH476

site_idAC2
Number of Residues5
Detailsbinding site for residue SO4 A 302
ChainResidue
AHOH432
BILE112
AVAL4
ATHR5
AHOH426

site_idAC3
Number of Residues6
Detailsbinding site for residue GOL A 303
ChainResidue
AGLY-2
APRO-4
AARG-3
ASER-1
AHIS0
AHOH409

site_idAC4
Number of Residues8
Detailsbinding site for residue GOL A 304
ChainResidue
AASP68
APRO69
ATYR70
APRO78
APHE79
AASN120
AHOH421
AHOH452

site_idAC5
Number of Residues5
Detailsbinding site for residue SO4 B 301
ChainResidue
BLYS160
BTHR161
BTYR180
BHIS181
BHOH441

site_idAC6
Number of Residues5
Detailsbinding site for residue GOL B 302
ChainResidue
BASP68
BPRO69
BTYR70
BPHE79
BASN120

site_idAC7
Number of Residues2
Detailsbinding site for residue GOL B 303
ChainResidue
BLYS87
BHOH448

Functional Information from PROSITE/UniProt
site_idPS00130
Number of Residues10
DetailsU_DNA_GLYCOSYLASE Uracil-DNA glycosylase signature. RVCVcGIDPY
ChainResidueDetails
AARG61-TYR70

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU10072
ChainResidueDetails
AASP68
BASP68

222624

PDB entries from 2024-07-17

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