5JVL
C4-type pyruvate phospate dikinase: nucleotide binding domain with bound ATP analogue
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0005524 | molecular_function | ATP binding |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0006090 | biological_process | pyruvate metabolic process |
| A | 0009507 | cellular_component | chloroplast |
| A | 0015979 | biological_process | photosynthesis |
| A | 0016301 | molecular_function | kinase activity |
| A | 0016310 | biological_process | phosphorylation |
| A | 0016740 | molecular_function | transferase activity |
| A | 0016772 | molecular_function | transferase activity, transferring phosphorus-containing groups |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0050242 | molecular_function | pyruvate, phosphate dikinase activity |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0005524 | molecular_function | ATP binding |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0006090 | biological_process | pyruvate metabolic process |
| B | 0009507 | cellular_component | chloroplast |
| B | 0015979 | biological_process | photosynthesis |
| B | 0016301 | molecular_function | kinase activity |
| B | 0016310 | biological_process | phosphorylation |
| B | 0016740 | molecular_function | transferase activity |
| B | 0016772 | molecular_function | transferase activity, transferring phosphorus-containing groups |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0050242 | molecular_function | pyruvate, phosphate dikinase activity |
| C | 0000166 | molecular_function | nucleotide binding |
| C | 0003824 | molecular_function | catalytic activity |
| C | 0005524 | molecular_function | ATP binding |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0006090 | biological_process | pyruvate metabolic process |
| C | 0009507 | cellular_component | chloroplast |
| C | 0015979 | biological_process | photosynthesis |
| C | 0016301 | molecular_function | kinase activity |
| C | 0016310 | biological_process | phosphorylation |
| C | 0016740 | molecular_function | transferase activity |
| C | 0016772 | molecular_function | transferase activity, transferring phosphorus-containing groups |
| C | 0046872 | molecular_function | metal ion binding |
| C | 0050242 | molecular_function | pyruvate, phosphate dikinase activity |
| D | 0000166 | molecular_function | nucleotide binding |
| D | 0003824 | molecular_function | catalytic activity |
| D | 0005524 | molecular_function | ATP binding |
| D | 0005737 | cellular_component | cytoplasm |
| D | 0006090 | biological_process | pyruvate metabolic process |
| D | 0009507 | cellular_component | chloroplast |
| D | 0015979 | biological_process | photosynthesis |
| D | 0016301 | molecular_function | kinase activity |
| D | 0016310 | biological_process | phosphorylation |
| D | 0016740 | molecular_function | transferase activity |
| D | 0016772 | molecular_function | transferase activity, transferring phosphorus-containing groups |
| D | 0046872 | molecular_function | metal ion binding |
| D | 0050242 | molecular_function | pyruvate, phosphate dikinase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 13 |
| Details | binding site for residue 6NQ A 901 |
| Chain | Residue |
| A | LYS25 |
| A | LEU335 |
| A | GLN336 |
| A | ARG338 |
| A | MG902 |
| A | SER93 |
| A | ARG95 |
| A | THR108 |
| A | SER242 |
| A | MET243 |
| A | VAL244 |
| A | GLY279 |
| A | GLU324 |
| site_id | AC2 |
| Number of Residues | 3 |
| Details | binding site for residue MG A 902 |
| Chain | Residue |
| A | GLU324 |
| A | GLN336 |
| A | 6NQ901 |
| site_id | AC3 |
| Number of Residues | 11 |
| Details | binding site for residue PEP A 903 |
| Chain | Residue |
| A | ARG562 |
| A | ARG619 |
| A | MET746 |
| A | GLU748 |
| A | GLY769 |
| A | THR770 |
| A | ASN771 |
| A | ASP772 |
| A | ARG782 |
| A | CYS834 |
| A | MG904 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | binding site for residue MG A 904 |
| Chain | Residue |
| A | ARG619 |
| A | ASP622 |
| A | GLU748 |
| A | ASP772 |
| A | PEP903 |
| site_id | AC5 |
| Number of Residues | 9 |
| Details | binding site for residue PEP B 901 |
| Chain | Residue |
| B | ARG562 |
| B | ARG619 |
| B | GLU748 |
| B | GLY769 |
| B | THR770 |
| B | ASN771 |
| B | ASP772 |
| B | CYS834 |
| B | MG902 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | binding site for residue MG B 902 |
| Chain | Residue |
| B | GLU748 |
| B | ASP772 |
| B | PEP901 |
| site_id | AC7 |
| Number of Residues | 12 |
| Details | binding site for residue 6NQ C 901 |
| Chain | Residue |
| C | LYS25 |
| C | SER93 |
| C | ARG95 |
| C | THR108 |
| C | SER242 |
| C | VAL244 |
| C | GLY279 |
| C | GLU280 |
| C | GLU324 |
| C | LEU335 |
| C | GLN336 |
| C | MG902 |
| site_id | AC8 |
| Number of Residues | 3 |
| Details | binding site for residue MG C 902 |
| Chain | Residue |
| C | GLU324 |
| C | GLN336 |
| C | 6NQ901 |
| site_id | AC9 |
| Number of Residues | 12 |
| Details | binding site for residue PEP C 903 |
| Chain | Residue |
| C | HIS456 |
| C | LEU560 |
| C | ARG562 |
| C | ARG619 |
| C | MET746 |
| C | GLU748 |
| C | GLY769 |
| C | THR770 |
| C | ASN771 |
| C | ASP772 |
| C | ARG782 |
| C | MG904 |
| site_id | AD1 |
| Number of Residues | 4 |
| Details | binding site for residue MG C 904 |
| Chain | Residue |
| C | ARG619 |
| C | GLU748 |
| C | ASP772 |
| C | PEP903 |
| site_id | AD2 |
| Number of Residues | 15 |
| Details | binding site for residue 6NQ D 901 |
| Chain | Residue |
| D | LYS25 |
| D | SER93 |
| D | ARG95 |
| D | THR108 |
| D | LEU110 |
| D | SER242 |
| D | MET243 |
| D | VAL244 |
| D | GLY279 |
| D | VAL283 |
| D | GLU324 |
| D | LEU335 |
| D | GLN336 |
| D | ARG338 |
| D | MG902 |
| site_id | AD3 |
| Number of Residues | 3 |
| Details | binding site for residue MG D 902 |
| Chain | Residue |
| D | GLU324 |
| D | GLN336 |
| D | 6NQ901 |
| site_id | AD4 |
| Number of Residues | 12 |
| Details | binding site for residue PEP D 903 |
| Chain | Residue |
| D | THR770 |
| D | ASN771 |
| D | ASP772 |
| D | ARG782 |
| D | CYS834 |
| D | MG904 |
| D | HIS456 |
| D | ARG562 |
| D | ARG619 |
| D | MET746 |
| D | GLU748 |
| D | GLY769 |
| site_id | AD5 |
| Number of Residues | 4 |
| Details | binding site for residue MG D 904 |
| Chain | Residue |
| D | ARG619 |
| D | GLU748 |
| D | ASP772 |
| D | PEP903 |
Functional Information from PROSITE/UniProt
| site_id | PS00370 |
| Number of Residues | 12 |
| Details | PEP_ENZYMES_PHOS_SITE PEP-utilizing enzymes phosphorylation site signature. GGmTsHAAVVAR |
| Chain | Residue | Details |
| A | GLY451-ARG462 |
| site_id | PS00742 |
| Number of Residues | 19 |
| Details | PEP_ENZYMES_2 PEP-utilizing enzymes signature 2. DfFSFGTNDLtQMTFGysR |
| Chain | Residue | Details |
| A | ASP764-ARG782 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | Active site: {"description":"Tele-phosphohistidine intermediate","evidences":[{"source":"UniProtKB","id":"P11155","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 4 |
| Details | Active site: {"description":"Proton donor","evidences":[{"source":"UniProtKB","id":"P11155","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 28 |
| Details | Binding site: {"evidences":[{"source":"UniProtKB","id":"P11155","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 4 |
| Details | Modified residue: {"description":"Phosphothreonine; by PDRP1","evidences":[{"evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
