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5JUL

Near atomic structure of the Dark apoptosome

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
A0002921biological_processnegative regulation of humoral immune response
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0005829cellular_componentcytosol
A0006915biological_processapoptotic process
A0007291biological_processsperm individualization
A0008656molecular_functioncysteine-type endopeptidase activator activity involved in apoptotic process
A0010332biological_processresponse to gamma radiation
A0012501biological_processprogrammed cell death
A0021556biological_processcentral nervous system formation
A0022416biological_processchaeta development
A0033353biological_processS-adenosylmethionine cycle
A0034352biological_processpositive regulation of glial cell apoptotic process
A0035006biological_processmelanization defense response
A0035070biological_processsalivary gland histolysis
A0042594biological_processresponse to starvation
A0042802molecular_functionidentical protein binding
A0043065biological_processpositive regulation of apoptotic process
A0043293cellular_componentapoptosome
A0043531molecular_functionADP binding
A0046672biological_processpositive regulation of compound eye retinal cell programmed cell death
A0048102biological_processautophagic cell death
A0048813biological_processdendrite morphogenesis
A0050700molecular_functionCARD domain binding
A0070050biological_processneuron cellular homeostasis
A0070328biological_processtriglyceride homeostasis
A1901053biological_processsarcosine catabolic process
B0002921biological_processnegative regulation of humoral immune response
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0005829cellular_componentcytosol
B0006915biological_processapoptotic process
B0007291biological_processsperm individualization
B0008656molecular_functioncysteine-type endopeptidase activator activity involved in apoptotic process
B0010332biological_processresponse to gamma radiation
B0012501biological_processprogrammed cell death
B0021556biological_processcentral nervous system formation
B0022416biological_processchaeta development
B0033353biological_processS-adenosylmethionine cycle
B0034352biological_processpositive regulation of glial cell apoptotic process
B0035006biological_processmelanization defense response
B0035070biological_processsalivary gland histolysis
B0042594biological_processresponse to starvation
B0042802molecular_functionidentical protein binding
B0043065biological_processpositive regulation of apoptotic process
B0043293cellular_componentapoptosome
B0043531molecular_functionADP binding
B0046672biological_processpositive regulation of compound eye retinal cell programmed cell death
B0048102biological_processautophagic cell death
B0048813biological_processdendrite morphogenesis
B0050700molecular_functionCARD domain binding
B0070050biological_processneuron cellular homeostasis
B0070328biological_processtriglyceride homeostasis
B1901053biological_processsarcosine catabolic process
C0002921biological_processnegative regulation of humoral immune response
C0005515molecular_functionprotein binding
C0005524molecular_functionATP binding
C0005829cellular_componentcytosol
C0006915biological_processapoptotic process
C0007291biological_processsperm individualization
C0008656molecular_functioncysteine-type endopeptidase activator activity involved in apoptotic process
C0010332biological_processresponse to gamma radiation
C0012501biological_processprogrammed cell death
C0021556biological_processcentral nervous system formation
C0022416biological_processchaeta development
C0033353biological_processS-adenosylmethionine cycle
C0034352biological_processpositive regulation of glial cell apoptotic process
C0035006biological_processmelanization defense response
C0035070biological_processsalivary gland histolysis
C0042594biological_processresponse to starvation
C0042802molecular_functionidentical protein binding
C0043065biological_processpositive regulation of apoptotic process
C0043293cellular_componentapoptosome
C0043531molecular_functionADP binding
C0046672biological_processpositive regulation of compound eye retinal cell programmed cell death
C0048102biological_processautophagic cell death
C0048813biological_processdendrite morphogenesis
C0050700molecular_functionCARD domain binding
C0070050biological_processneuron cellular homeostasis
C0070328biological_processtriglyceride homeostasis
C1901053biological_processsarcosine catabolic process
D0002921biological_processnegative regulation of humoral immune response
D0005515molecular_functionprotein binding
D0005524molecular_functionATP binding
D0005829cellular_componentcytosol
D0006915biological_processapoptotic process
D0007291biological_processsperm individualization
D0008656molecular_functioncysteine-type endopeptidase activator activity involved in apoptotic process
D0010332biological_processresponse to gamma radiation
D0012501biological_processprogrammed cell death
D0021556biological_processcentral nervous system formation
D0022416biological_processchaeta development
D0033353biological_processS-adenosylmethionine cycle
D0034352biological_processpositive regulation of glial cell apoptotic process
D0035006biological_processmelanization defense response
D0035070biological_processsalivary gland histolysis
D0042594biological_processresponse to starvation
D0042802molecular_functionidentical protein binding
D0043065biological_processpositive regulation of apoptotic process
D0043293cellular_componentapoptosome
D0043531molecular_functionADP binding
D0046672biological_processpositive regulation of compound eye retinal cell programmed cell death
D0048102biological_processautophagic cell death
D0048813biological_processdendrite morphogenesis
D0050700molecular_functionCARD domain binding
D0070050biological_processneuron cellular homeostasis
D0070328biological_processtriglyceride homeostasis
D1901053biological_processsarcosine catabolic process
E0002921biological_processnegative regulation of humoral immune response
E0005515molecular_functionprotein binding
E0005524molecular_functionATP binding
E0005829cellular_componentcytosol
E0006915biological_processapoptotic process
E0007291biological_processsperm individualization
E0008656molecular_functioncysteine-type endopeptidase activator activity involved in apoptotic process
E0010332biological_processresponse to gamma radiation
E0012501biological_processprogrammed cell death
E0021556biological_processcentral nervous system formation
E0022416biological_processchaeta development
E0033353biological_processS-adenosylmethionine cycle
E0034352biological_processpositive regulation of glial cell apoptotic process
E0035006biological_processmelanization defense response
E0035070biological_processsalivary gland histolysis
E0042594biological_processresponse to starvation
E0042802molecular_functionidentical protein binding
E0043065biological_processpositive regulation of apoptotic process
E0043293cellular_componentapoptosome
E0043531molecular_functionADP binding
E0046672biological_processpositive regulation of compound eye retinal cell programmed cell death
E0048102biological_processautophagic cell death
E0048813biological_processdendrite morphogenesis
E0050700molecular_functionCARD domain binding
E0070050biological_processneuron cellular homeostasis
E0070328biological_processtriglyceride homeostasis
E1901053biological_processsarcosine catabolic process
F0002921biological_processnegative regulation of humoral immune response
F0005515molecular_functionprotein binding
F0005524molecular_functionATP binding
F0005829cellular_componentcytosol
F0006915biological_processapoptotic process
F0007291biological_processsperm individualization
F0008656molecular_functioncysteine-type endopeptidase activator activity involved in apoptotic process
F0010332biological_processresponse to gamma radiation
F0012501biological_processprogrammed cell death
F0021556biological_processcentral nervous system formation
F0022416biological_processchaeta development
F0033353biological_processS-adenosylmethionine cycle
F0034352biological_processpositive regulation of glial cell apoptotic process
F0035006biological_processmelanization defense response
F0035070biological_processsalivary gland histolysis
F0042594biological_processresponse to starvation
F0042802molecular_functionidentical protein binding
F0043065biological_processpositive regulation of apoptotic process
F0043293cellular_componentapoptosome
F0043531molecular_functionADP binding
F0046672biological_processpositive regulation of compound eye retinal cell programmed cell death
F0048102biological_processautophagic cell death
F0048813biological_processdendrite morphogenesis
F0050700molecular_functionCARD domain binding
F0070050biological_processneuron cellular homeostasis
F0070328biological_processtriglyceride homeostasis
F1901053biological_processsarcosine catabolic process
G0002921biological_processnegative regulation of humoral immune response
G0005515molecular_functionprotein binding
G0005524molecular_functionATP binding
G0005829cellular_componentcytosol
G0006915biological_processapoptotic process
G0007291biological_processsperm individualization
G0008656molecular_functioncysteine-type endopeptidase activator activity involved in apoptotic process
G0010332biological_processresponse to gamma radiation
G0012501biological_processprogrammed cell death
G0021556biological_processcentral nervous system formation
G0022416biological_processchaeta development
G0033353biological_processS-adenosylmethionine cycle
G0034352biological_processpositive regulation of glial cell apoptotic process
G0035006biological_processmelanization defense response
G0035070biological_processsalivary gland histolysis
G0042594biological_processresponse to starvation
G0042802molecular_functionidentical protein binding
G0043065biological_processpositive regulation of apoptotic process
G0043293cellular_componentapoptosome
G0043531molecular_functionADP binding
G0046672biological_processpositive regulation of compound eye retinal cell programmed cell death
G0048102biological_processautophagic cell death
G0048813biological_processdendrite morphogenesis
G0050700molecular_functionCARD domain binding
G0070050biological_processneuron cellular homeostasis
G0070328biological_processtriglyceride homeostasis
G1901053biological_processsarcosine catabolic process
H0002921biological_processnegative regulation of humoral immune response
H0005515molecular_functionprotein binding
H0005524molecular_functionATP binding
H0005829cellular_componentcytosol
H0006915biological_processapoptotic process
H0007291biological_processsperm individualization
H0008656molecular_functioncysteine-type endopeptidase activator activity involved in apoptotic process
H0010332biological_processresponse to gamma radiation
H0012501biological_processprogrammed cell death
H0021556biological_processcentral nervous system formation
H0022416biological_processchaeta development
H0033353biological_processS-adenosylmethionine cycle
H0034352biological_processpositive regulation of glial cell apoptotic process
H0035006biological_processmelanization defense response
H0035070biological_processsalivary gland histolysis
H0042594biological_processresponse to starvation
H0042802molecular_functionidentical protein binding
H0043065biological_processpositive regulation of apoptotic process
H0043293cellular_componentapoptosome
H0043531molecular_functionADP binding
H0046672biological_processpositive regulation of compound eye retinal cell programmed cell death
H0048102biological_processautophagic cell death
H0048813biological_processdendrite morphogenesis
H0050700molecular_functionCARD domain binding
H0070050biological_processneuron cellular homeostasis
H0070328biological_processtriglyceride homeostasis
H1901053biological_processsarcosine catabolic process
I0002921biological_processnegative regulation of humoral immune response
I0005515molecular_functionprotein binding
I0005524molecular_functionATP binding
I0005829cellular_componentcytosol
I0006915biological_processapoptotic process
I0007291biological_processsperm individualization
I0008656molecular_functioncysteine-type endopeptidase activator activity involved in apoptotic process
I0010332biological_processresponse to gamma radiation
I0012501biological_processprogrammed cell death
I0021556biological_processcentral nervous system formation
I0022416biological_processchaeta development
I0033353biological_processS-adenosylmethionine cycle
I0034352biological_processpositive regulation of glial cell apoptotic process
I0035006biological_processmelanization defense response
I0035070biological_processsalivary gland histolysis
I0042594biological_processresponse to starvation
I0042802molecular_functionidentical protein binding
I0043065biological_processpositive regulation of apoptotic process
I0043293cellular_componentapoptosome
I0043531molecular_functionADP binding
I0046672biological_processpositive regulation of compound eye retinal cell programmed cell death
I0048102biological_processautophagic cell death
I0048813biological_processdendrite morphogenesis
I0050700molecular_functionCARD domain binding
I0070050biological_processneuron cellular homeostasis
I0070328biological_processtriglyceride homeostasis
I1901053biological_processsarcosine catabolic process
J0002921biological_processnegative regulation of humoral immune response
J0005515molecular_functionprotein binding
J0005524molecular_functionATP binding
J0005829cellular_componentcytosol
J0006915biological_processapoptotic process
J0007291biological_processsperm individualization
J0008656molecular_functioncysteine-type endopeptidase activator activity involved in apoptotic process
J0010332biological_processresponse to gamma radiation
J0012501biological_processprogrammed cell death
J0021556biological_processcentral nervous system formation
J0022416biological_processchaeta development
J0033353biological_processS-adenosylmethionine cycle
J0034352biological_processpositive regulation of glial cell apoptotic process
J0035006biological_processmelanization defense response
J0035070biological_processsalivary gland histolysis
J0042594biological_processresponse to starvation
J0042802molecular_functionidentical protein binding
J0043065biological_processpositive regulation of apoptotic process
J0043293cellular_componentapoptosome
J0043531molecular_functionADP binding
J0046672biological_processpositive regulation of compound eye retinal cell programmed cell death
J0048102biological_processautophagic cell death
J0048813biological_processdendrite morphogenesis
J0050700molecular_functionCARD domain binding
J0070050biological_processneuron cellular homeostasis
J0070328biological_processtriglyceride homeostasis
J1901053biological_processsarcosine catabolic process
K0002921biological_processnegative regulation of humoral immune response
K0005515molecular_functionprotein binding
K0005524molecular_functionATP binding
K0005829cellular_componentcytosol
K0006915biological_processapoptotic process
K0007291biological_processsperm individualization
K0008656molecular_functioncysteine-type endopeptidase activator activity involved in apoptotic process
K0010332biological_processresponse to gamma radiation
K0012501biological_processprogrammed cell death
K0021556biological_processcentral nervous system formation
K0022416biological_processchaeta development
K0033353biological_processS-adenosylmethionine cycle
K0034352biological_processpositive regulation of glial cell apoptotic process
K0035006biological_processmelanization defense response
K0035070biological_processsalivary gland histolysis
K0042594biological_processresponse to starvation
K0042802molecular_functionidentical protein binding
K0043065biological_processpositive regulation of apoptotic process
K0043293cellular_componentapoptosome
K0043531molecular_functionADP binding
K0046672biological_processpositive regulation of compound eye retinal cell programmed cell death
K0048102biological_processautophagic cell death
K0048813biological_processdendrite morphogenesis
K0050700molecular_functionCARD domain binding
K0070050biological_processneuron cellular homeostasis
K0070328biological_processtriglyceride homeostasis
K1901053biological_processsarcosine catabolic process
L0002921biological_processnegative regulation of humoral immune response
L0005515molecular_functionprotein binding
L0005524molecular_functionATP binding
L0005829cellular_componentcytosol
L0006915biological_processapoptotic process
L0007291biological_processsperm individualization
L0008656molecular_functioncysteine-type endopeptidase activator activity involved in apoptotic process
L0010332biological_processresponse to gamma radiation
L0012501biological_processprogrammed cell death
L0021556biological_processcentral nervous system formation
L0022416biological_processchaeta development
L0033353biological_processS-adenosylmethionine cycle
L0034352biological_processpositive regulation of glial cell apoptotic process
L0035006biological_processmelanization defense response
L0035070biological_processsalivary gland histolysis
L0042594biological_processresponse to starvation
L0042802molecular_functionidentical protein binding
L0043065biological_processpositive regulation of apoptotic process
L0043293cellular_componentapoptosome
L0043531molecular_functionADP binding
L0046672biological_processpositive regulation of compound eye retinal cell programmed cell death
L0048102biological_processautophagic cell death
L0048813biological_processdendrite morphogenesis
L0050700molecular_functionCARD domain binding
L0070050biological_processneuron cellular homeostasis
L0070328biological_processtriglyceride homeostasis
L1901053biological_processsarcosine catabolic process
M0002921biological_processnegative regulation of humoral immune response
M0005515molecular_functionprotein binding
M0005524molecular_functionATP binding
M0005829cellular_componentcytosol
M0006915biological_processapoptotic process
M0007291biological_processsperm individualization
M0008656molecular_functioncysteine-type endopeptidase activator activity involved in apoptotic process
M0010332biological_processresponse to gamma radiation
M0012501biological_processprogrammed cell death
M0021556biological_processcentral nervous system formation
M0022416biological_processchaeta development
M0033353biological_processS-adenosylmethionine cycle
M0034352biological_processpositive regulation of glial cell apoptotic process
M0035006biological_processmelanization defense response
M0035070biological_processsalivary gland histolysis
M0042594biological_processresponse to starvation
M0042802molecular_functionidentical protein binding
M0043065biological_processpositive regulation of apoptotic process
M0043293cellular_componentapoptosome
M0043531molecular_functionADP binding
M0046672biological_processpositive regulation of compound eye retinal cell programmed cell death
M0048102biological_processautophagic cell death
M0048813biological_processdendrite morphogenesis
M0050700molecular_functionCARD domain binding
M0070050biological_processneuron cellular homeostasis
M0070328biological_processtriglyceride homeostasis
M1901053biological_processsarcosine catabolic process
N0002921biological_processnegative regulation of humoral immune response
N0005515molecular_functionprotein binding
N0005524molecular_functionATP binding
N0005829cellular_componentcytosol
N0006915biological_processapoptotic process
N0007291biological_processsperm individualization
N0008656molecular_functioncysteine-type endopeptidase activator activity involved in apoptotic process
N0010332biological_processresponse to gamma radiation
N0012501biological_processprogrammed cell death
N0021556biological_processcentral nervous system formation
N0022416biological_processchaeta development
N0033353biological_processS-adenosylmethionine cycle
N0034352biological_processpositive regulation of glial cell apoptotic process
N0035006biological_processmelanization defense response
N0035070biological_processsalivary gland histolysis
N0042594biological_processresponse to starvation
N0042802molecular_functionidentical protein binding
N0043065biological_processpositive regulation of apoptotic process
N0043293cellular_componentapoptosome
N0043531molecular_functionADP binding
N0046672biological_processpositive regulation of compound eye retinal cell programmed cell death
N0048102biological_processautophagic cell death
N0048813biological_processdendrite morphogenesis
N0050700molecular_functionCARD domain binding
N0070050biological_processneuron cellular homeostasis
N0070328biological_processtriglyceride homeostasis
N1901053biological_processsarcosine catabolic process
O0002921biological_processnegative regulation of humoral immune response
O0005515molecular_functionprotein binding
O0005524molecular_functionATP binding
O0005829cellular_componentcytosol
O0006915biological_processapoptotic process
O0007291biological_processsperm individualization
O0008656molecular_functioncysteine-type endopeptidase activator activity involved in apoptotic process
O0010332biological_processresponse to gamma radiation
O0012501biological_processprogrammed cell death
O0021556biological_processcentral nervous system formation
O0022416biological_processchaeta development
O0033353biological_processS-adenosylmethionine cycle
O0034352biological_processpositive regulation of glial cell apoptotic process
O0035006biological_processmelanization defense response
O0035070biological_processsalivary gland histolysis
O0042594biological_processresponse to starvation
O0042802molecular_functionidentical protein binding
O0043065biological_processpositive regulation of apoptotic process
O0043293cellular_componentapoptosome
O0043531molecular_functionADP binding
O0046672biological_processpositive regulation of compound eye retinal cell programmed cell death
O0048102biological_processautophagic cell death
O0048813biological_processdendrite morphogenesis
O0050700molecular_functionCARD domain binding
O0070050biological_processneuron cellular homeostasis
O0070328biological_processtriglyceride homeostasis
O1901053biological_processsarcosine catabolic process
P0002921biological_processnegative regulation of humoral immune response
P0005515molecular_functionprotein binding
P0005524molecular_functionATP binding
P0005829cellular_componentcytosol
P0006915biological_processapoptotic process
P0007291biological_processsperm individualization
P0008656molecular_functioncysteine-type endopeptidase activator activity involved in apoptotic process
P0010332biological_processresponse to gamma radiation
P0012501biological_processprogrammed cell death
P0021556biological_processcentral nervous system formation
P0022416biological_processchaeta development
P0033353biological_processS-adenosylmethionine cycle
P0034352biological_processpositive regulation of glial cell apoptotic process
P0035006biological_processmelanization defense response
P0035070biological_processsalivary gland histolysis
P0042594biological_processresponse to starvation
P0042802molecular_functionidentical protein binding
P0043065biological_processpositive regulation of apoptotic process
P0043293cellular_componentapoptosome
P0043531molecular_functionADP binding
P0046672biological_processpositive regulation of compound eye retinal cell programmed cell death
P0048102biological_processautophagic cell death
P0048813biological_processdendrite morphogenesis
P0050700molecular_functionCARD domain binding
P0070050biological_processneuron cellular homeostasis
P0070328biological_processtriglyceride homeostasis
P1901053biological_processsarcosine catabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues13
Detailsbinding site for residue DTP A 1501
ChainResidue
AASN124
AARG267
ALEU300
APRO321
AARG322
AVAL125
ASER126
AGLY154
AGLY156
ALYS157
ATHR158
ATRP159
AASN246

site_idAC2
Number of Residues13
Detailsbinding site for residue DTP B 1501
ChainResidue
BASN124
BVAL125
BSER126
BGLY154
BGLY156
BLYS157
BTHR158
BTRP159
BASN246
BARG267
BLEU300
BPRO321
BARG322

site_idAC3
Number of Residues13
Detailsbinding site for residue DTP C 1501
ChainResidue
CASN124
CVAL125
CSER126
CGLY154
CGLY156
CLYS157
CTHR158
CTRP159
CASN246
CARG267
CLEU300
CPRO321
CARG322

site_idAC4
Number of Residues13
Detailsbinding site for residue DTP D 1501
ChainResidue
DASN124
DVAL125
DSER126
DGLY154
DGLY156
DLYS157
DTHR158
DTRP159
DASN246
DARG267
DLEU300
DPRO321
DARG322

site_idAC5
Number of Residues13
Detailsbinding site for residue DTP E 1501
ChainResidue
EASN124
EVAL125
ESER126
EGLY154
EGLY156
ELYS157
ETHR158
ETRP159
EASN246
EARG267
ELEU300
EPRO321
EARG322

site_idAC6
Number of Residues13
Detailsbinding site for residue DTP F 1501
ChainResidue
FASN124
FVAL125
FSER126
FGLY154
FGLY156
FLYS157
FTHR158
FTRP159
FASN246
FARG267
FLEU300
FPRO321
FARG322

site_idAC7
Number of Residues13
Detailsbinding site for residue DTP G 1501
ChainResidue
GASN124
GVAL125
GSER126
GGLY154
GGLY156
GLYS157
GTHR158
GTRP159
GASN246
GARG267
GLEU300
GPRO321
GARG322

site_idAC8
Number of Residues13
Detailsbinding site for residue DTP H 1501
ChainResidue
HASN246
HARG267
HLEU300
HPRO321
HARG322
HASN124
HVAL125
HSER126
HGLY154
HGLY156
HLYS157
HTHR158
HTRP159

site_idAC9
Number of Residues13
Detailsbinding site for residue DTP I 1501
ChainResidue
IASN124
IVAL125
ISER126
IGLY154
IGLY156
ILYS157
ITHR158
ITRP159
IASN246
IARG267
ILEU300
IPRO321
IARG322

site_idAD1
Number of Residues13
Detailsbinding site for residue DTP J 1501
ChainResidue
JASN124
JVAL125
JSER126
JGLY154
JGLY156
JLYS157
JTHR158
JTRP159
JASN246
JARG267
JLEU300
JPRO321
JARG322

site_idAD2
Number of Residues13
Detailsbinding site for residue DTP K 1501
ChainResidue
KASN124
KVAL125
KSER126
KGLY154
KGLY156
KLYS157
KTHR158
KTRP159
KASN246
KARG267
KLEU300
KPRO321
KARG322

site_idAD3
Number of Residues13
Detailsbinding site for residue DTP L 1501
ChainResidue
LASN124
LVAL125
LSER126
LGLY154
LGLY156
LLYS157
LTHR158
LTRP159
LASN246
LARG267
LLEU300
LPRO321
LARG322

site_idAD4
Number of Residues13
Detailsbinding site for residue DTP M 1501
ChainResidue
MASN124
MVAL125
MSER126
MGLY154
MGLY156
MLYS157
MTHR158
MTRP159
MASN246
MARG267
MLEU300
MPRO321
MARG322

site_idAD5
Number of Residues13
Detailsbinding site for residue DTP N 1501
ChainResidue
NASN124
NVAL125
NSER126
NGLY154
NGLY156
NLYS157
NTHR158
NTRP159
NASN246
NARG267
NLEU300
NPRO321
NARG322

site_idAD6
Number of Residues13
Detailsbinding site for residue DTP O 1501
ChainResidue
OASN124
OVAL125
OSER126
OGLY154
OGLY156
OLYS157
OTHR158
OTRP159
OASN246
OARG267
OLEU300
OPRO321
OARG322

site_idAD7
Number of Residues13
Detailsbinding site for residue DTP P 1501
ChainResidue
PASN124
PVAL125
PSER126
PGLY154
PGLY156
PLYS157
PTHR158
PTRP159
PASN246
PARG267
PLEU300
PPRO321
PARG322

218853

PDB entries from 2024-04-24

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