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5JSP

New Mechanistic Insight from Substrate and Product Bound Structures of the Metal-dependent Dimethylsulfoniopropionate Lyase DddQ

Functional Information from GO Data
ChainGOidnamespacecontents
A0016829molecular_functionlyase activity
A0046872molecular_functionmetal ion binding
A0047869molecular_functiondimethylpropiothetin dethiomethylase activity
B0016829molecular_functionlyase activity
B0046872molecular_functionmetal ion binding
B0047869molecular_functiondimethylpropiothetin dethiomethylase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue FE A 301
ChainResidue
AHIS125
AGLU129
ATYR131
AHIS163
ADQY302

site_idAC2
Number of Residues8
Detailsbinding site for residue DQY A 302
ChainResidue
AHIS125
AGLU129
ATYR131
AFE301
ATYR92
ATYR110
ATYR120
AHIS123

site_idAC3
Number of Residues2
Detailsbinding site for residue BR A 303
ChainResidue
AGLY53
AGLY136

site_idAC4
Number of Residues4
Detailsbinding site for residue CL A 304
ChainResidue
AARG38
AARG75
AHOH467
AHOH508

site_idAC5
Number of Residues3
Detailsbinding site for residue CL A 305
ChainResidue
ATRP26
AGOL307
AHOH468

site_idAC6
Number of Residues2
Detailsbinding site for residue CL A 306
ChainResidue
ATYR113
AHOH510

site_idAC7
Number of Residues4
Detailsbinding site for residue GOL A 307
ChainResidue
AGLU4
ALEU7
APHE102
ACL305

site_idAC8
Number of Residues5
Detailsbinding site for residue FE B 301
ChainResidue
BHIS125
BGLU129
BTYR131
BHIS163
BDQY302

site_idAC9
Number of Residues8
Detailsbinding site for residue DQY B 302
ChainResidue
BTYR92
BTYR110
BTYR120
BHIS123
BHIS125
BGLU129
BTYR131
BFE301

site_idAD1
Number of Residues2
Detailsbinding site for residue BR B 303
ChainResidue
BGLY53
BGLY136

site_idAD2
Number of Residues3
Detailsbinding site for residue CL B 304
ChainResidue
BTYR113
BHOH447
BHOH494

site_idAD3
Number of Residues3
Detailsbinding site for residue CL B 305
ChainResidue
BARG38
BARG75
BHOH480

site_idAD4
Number of Residues3
Detailsbinding site for residue CL B 306
ChainResidue
BTRP26
BLEU30
BHOH483

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:24395783, ECO:0007744|PDB:4LA2, ECO:0007744|PDB:4LA3
ChainResidueDetails
AHIS125
AGLU129
AHIS163
BHIS125
BGLU129
BHIS163

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:24395783, ECO:0007744|PDB:4LA2
ChainResidueDetails
ATYR131
BTYR131

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PDB entries from 2025-06-18

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