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5JOR

Crystal structure of unbound anti-glycan antibody Fab14.22 at 2.2 A

Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue GOL B 301
ChainResidue
BTYR145
BGLU148
BSER149
BVAL150
BPRO167
BALA168

site_idAC2
Number of Residues6
Detailsbinding site for residue GOL B 302
ChainResidue
CPHE89
CARG96
CPHE98
BHIS35
BARG94
CTYR36

site_idAC3
Number of Residues6
Detailsbinding site for residue SO4 B 303
ChainResidue
BTYR33
BHIS35
BTRP95
BHOH446
BHOH447
CARG96

site_idAC4
Number of Residues2
Detailsbinding site for residue SO4 B 304
ChainResidue
BSER172
BLEU174

site_idAC5
Number of Residues2
Detailsbinding site for residue SO4 B 305
ChainResidue
BLEU159
BTHR187

site_idAC6
Number of Residues8
Detailsbinding site for residue 1PE B 306
ChainResidue
BGLY42
BTYR91
BGLN105
BGLY106
BTHR108
BHOH402
CPRO40
CGLY41

site_idAC7
Number of Residues6
Detailsbinding site for residue 1PE B 307
ChainResidue
BGLY133
BSER134
FTYR33
FHIS35
FTRP95
FHOH422

site_idAC8
Number of Residues7
Detailsbinding site for residue 1PE B 308
ChainResidue
BSER120
BTYR122
BLYS143
B1PE311
CGLN124
CSER127
CSER131

site_idAC9
Number of Residues4
Detailsbinding site for residue 1PE B 309
ChainResidue
BGLN41
BGLY42
BTHR108
BSER149

site_idAD1
Number of Residues1
Detailsbinding site for residue 1PE B 310
ChainResidue
BGLN41

site_idAD2
Number of Residues12
Detailsbinding site for residue 1PE B 311
ChainResidue
BLYS143
BGLY144
BGLN171
BSER172
BLEU174
BTYR175
BTHR176
B1PE308
CGLY129
CTHR180
CLEU181
CTHR182

site_idAD3
Number of Residues7
Detailsbinding site for residue GOL A 301
ChainResidue
ALYS103
AGOL302
AHOH479
DGLN41
DGLY42
DARG43
LSER26

site_idAD4
Number of Residues9
Detailsbinding site for residue GOL A 302
ChainResidue
AGLN38
AARG39
APRO40
AGLY41
AGLN42
AGOL301
AHOH406
AHOH440
DGLY42

site_idAD5
Number of Residues4
Detailsbinding site for residue GOL A 303
ChainResidue
AASN145
AVAL146
AASN161
ATRP163

site_idAD6
Number of Residues3
Detailsbinding site for residue SO4 A 304
ChainResidue
APRO8
ALEU9
ASER10

site_idAD7
Number of Residues5
Detailsbinding site for residue SO4 A 305
ChainResidue
ATYR36
APHE89
DHIS35
DTRP47
DSO4307

site_idAD8
Number of Residues5
Detailsbinding site for residue 1PE A 306
ChainResidue
ALEU15
AILE106
AARG108
AASP170
ASER171

site_idAD9
Number of Residues4
Detailsbinding site for residue GOL F 301
ChainResidue
EGLN124
ESER127
FTYR122
FLYS143

site_idAE1
Number of Residues3
Detailsbinding site for residue GOL F 302
ChainResidue
FGLU23
FGLN5
FSER21

site_idAE2
Number of Residues2
Detailsbinding site for residue GOL F 303
ChainResidue
FSER134
LSER168

site_idAE3
Number of Residues3
Detailsbinding site for residue GOL F 304
ChainResidue
FGLY106
FTHR108
FGOL305

site_idAE4
Number of Residues9
Detailsbinding site for residue GOL F 305
ChainResidue
FSER7
FGLY8
FPRO9
FGLN105
FGLY106
FTHR107
FTHR108
FGOL304
FHOH456

site_idAE5
Number of Residues4
Detailsbinding site for residue GOL F 306
ChainResidue
FGLY8
FPRO9
FGLU10
FHOH407

site_idAE6
Number of Residues5
Detailsbinding site for residue GOL F 307
ChainResidue
FALA16
FSER17
FGLU81
FHIS82
FSER82

site_idAE7
Number of Residues7
Detailsbinding site for residue GOL F 308
ChainResidue
EASP1
ELEU3
ETHR97
EHOH409
FGLU46
FASN60
FHOH402

site_idAE8
Number of Residues5
Detailsbinding site for residue SO4 F 309
ChainResidue
FGLN61
FARG64
FHOH405
FHOH410
FHOH420

site_idAE9
Number of Residues3
Detailsbinding site for residue SO4 F 310
ChainResidue
FARG64
FHOH404
FHOH409

site_idAF1
Number of Residues7
Detailsbinding site for residue SO4 F 311
ChainResidue
FTHR132
FGLY133
FSER134
FSER135
LILE106
LASP170
LSER171

site_idAF2
Number of Residues2
Detailsbinding site for residue 1PE F 313
ChainResidue
FARG64
FGLY65

site_idAF3
Number of Residues5
Detailsbinding site for residue GOL H 301
ChainResidue
HALA88
HVAL89
HLEU109
HTHR110
HHOH405

site_idAF4
Number of Residues10
Detailsbinding site for residue GOL H 302
ChainResidue
HLEU141
HPHE166
HLEU169
HTHR176
HMET177
HSER178
HHOH402
LSER162
LSER176
LTHR178

site_idAF5
Number of Residues4
Detailsbinding site for residue SO4 H 303
ChainResidue
HSER135
HSER162
HTHR182
HPRO184

site_idAF6
Number of Residues2
Detailsbinding site for residue SO4 H 304
ChainResidue
HLEU159
HTHR187

site_idAF7
Number of Residues6
Detailsbinding site for residue 1PE H 305
ChainResidue
HASN62
HLYS66
HTHR83
HGLU85
HASP86
HHOH448

site_idAF8
Number of Residues3
Detailsbinding site for residue 1PE H 306
ChainResidue
HVAL163
HHIS164
HTHR165

site_idAF9
Number of Residues4
Detailsbinding site for residue GOL L 301
ChainResidue
CGLY29
LSER122
LLEU125
LTHR126

site_idAG1
Number of Residues5
Detailsbinding site for residue GOL L 302
ChainResidue
AASP1
LTHR7
LSER20
LSER22
LHOH431

site_idAG2
Number of Residues3
Detailsbinding site for residue GOL L 303
ChainResidue
LASP60
LSER76
LHOH455

site_idAG3
Number of Residues5
Detailsbinding site for residue GOL L 304
ChainResidue
LARG39
LILE58
LPHE62
LASP82
LHOH473

site_idAG4
Number of Residues3
Detailsbinding site for residue SO4 L 305
ChainResidue
LARG54
LARG63
LHOH462

site_idAG5
Number of Residues2
Detailsbinding site for residue SO4 L 306
ChainResidue
LGLN156
LASN157

site_idAG6
Number of Residues10
Detailsbinding site for residue GOL C 301
ChainResidue
BLEU169
BTHR176
BMET177
BSER178
BHOH419
CLEU160
CSER176
CSER177
CTHR178
CHOH406

site_idAG7
Number of Residues1
Detailsbinding site for residue GOL C 302
ChainResidue
CASN14

site_idAG8
Number of Residues3
Detailsbinding site for residue SO4 C 303
ChainResidue
CPRO8
CLEU9
CSER10

site_idAG9
Number of Residues4
Detailsbinding site for residue SO4 C 304
ChainResidue
CARG39
CLYS45
CLEU47
CPRO59

site_idAH1
Number of Residues2
Detailsbinding site for residue SO4 C 305
ChainResidue
CTHR182
CARG188

site_idAH2
Number of Residues8
Detailsbinding site for residue 1PE C 306
ChainResidue
BVAL163
BHIS164
BTHR165
BHOH411
CASP165
CGLN166
CASP167
CSER168

site_idAH3
Number of Residues4
Detailsbinding site for residue GOL D 301
ChainResidue
DPRO118
DPRO119
DGOL305
DHOH447

site_idAH4
Number of Residues4
Detailsbinding site for residue GOL D 302
ChainResidue
DPRO200
DSER203
DTHR204
DTHR205

site_idAH5
Number of Residues5
Detailsbinding site for residue GOL D 303
ChainResidue
DSER84
DSER87
DVAL111
DLEU170
DTYR175

site_idAH6
Number of Residues3
Detailsbinding site for residue GOL D 304
ChainResidue
DLEU159
DTHR187
DHOH410

site_idAH7
Number of Residues5
Detailsbinding site for residue GOL D 305
ChainResidue
DPRO119
DSER120
DVAL121
DLYS208
DGOL301

site_idAH8
Number of Residues7
Detailsbinding site for residue GOL D 306
ChainResidue
DTYR145
DGLU148
DSER149
DVAL150
DTHR165
DPRO167
DALA168

site_idAH9
Number of Residues7
Detailsbinding site for residue SO4 D 307
ChainResidue
AARG96
ASO4305
DTYR33
DHIS35
DTRP95
DHOH409
DHOH416

site_idAI1
Number of Residues3
Detailsbinding site for residue 1PE D 308
ChainResidue
DSER113
DALA114
DSER172

site_idAI2
Number of Residues7
Detailsbinding site for residue GOL E 301
ChainResidue
ELEU160
ESER176
ESER177
ETHR178
FLEU141
FTHR176
FSER178

site_idAI3
Number of Residues6
Detailsbinding site for residue GOL E 302
ChainResidue
ETHR164
EASP165
EASP167
EHOH408
FHIS164
FTHR165

site_idAI4
Number of Residues3
Detailsbinding site for residue GOL E 303
ChainResidue
ELYS207
LASN14
LLYS107

site_idAI5
Number of Residues2
Detailsbinding site for residue GOL E 304
ChainResidue
EASP184
EHOH415

site_idAI6
Number of Residues7
Detailsbinding site for residue GOL E 305
ChainResidue
EPRO113
EVAL115
EILE205
ELYS207
EHOH407
EHOH431
FTHR132

site_idAI7
Number of Residues9
Detailsbinding site for residue GOL E 306
ChainResidue
EILE106
EARG108
ELYS169
EASP170
ESER171
EHOH442
HTHR132
HGLY133
HSER134

site_idAI8
Number of Residues3
Detailsbinding site for residue SO4 E 307
ChainResidue
EARG54
EARG63
EHOH459

site_idAI9
Number of Residues7
Detailsbinding site for residue 1PE E 309
ChainResidue
EARG108
ETHR114
EASN138
EHOH427
EHOH455
LARG108
LASN138

site_idAJ1
Number of Residues8
Detailsbinding site for Di-peptide SO4 E 308 and LYS E 107
ChainResidue
EPRO12
EVAL13
EASN14
EILE106
EARG108
ETYR140
HGLY133
L1PE307

site_idAJ2
Number of Residues6
Detailsbinding site for residues SO4 F 312 and 1PE F 314
ChainResidue
FASN62
FPHE63
FLYS66
FSER82
FTHR83
FGLU85

site_idAJ3
Number of Residues16
Detailsbinding site for Di-peptide 1PE L 307 and SER L 201
ChainResidue
EASN14
ELYS107
EALA109
EASP110
ESO4308
LALA112
LPRO113
LHIS198
LLYS199
LTHR200
LTHR202
LSER203
LILE205
LHOH411
LHOH426
LHOH438

Functional Information from PROSITE/UniProt
site_idPS00290
Number of Residues7
DetailsIG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YTCEATH
ChainResidueDetails
ATYR192-HIS198

222036

PDB entries from 2024-07-03

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